RNA id: TCONS_00010172


Basic Information

Item Value
RNA id TCONS_00010172
length 883
lncRNA type retained_intron
GC content 0.38
exon number 4
gene id XLOC_005297
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18410608 ~ 18414539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGGACAAAAGAACAGATGATCTCTGCCGCTCTGAAGTTTTTGGAAACAGACACTATCTGTTACAGAGTAGAAGAACCTCCAGGCCTTGTGGAACTTCAGACAAATGAATGGGACCCTGTGATGAACTGGATTGAACAAAGGTAAAATTGACAGATTTTTGGTCAGAGTTTTGATTGTGTACTAATTACAAAAAGTTACAATTTACTGGTATATAAGAACGTACTGTTGTTTTTAGGTACAATGTAGTCATTGGCTCGTCCTCCAATATAATGGGCCCTCAAATCCCAGAAGAGACTAAAGAGACATTTCATCAGCACCTTAATTCCTTCAACTTCTGGTCTCTGACAGGGCTTGAGTTTGTGATCAATCAGCTGAAGTCGCTGGTTTTGTCCTTTGCGCTGATTGACAGACACCTAAATGTGGAAGAAGCGGTTCTGTTGTCCAGACTTGAGGAAGAATACCAGATTCGGAGCTGGGGAAATGTGGAGTGGGTCCATGATTATGACATGTATGAGCTGAGAGCGCGAACGGCGGCTGGTGCATTGTTTGTGCATCTGTCATCTGAAAAAACatctgtgaagaaaaaaatcttacaaGACTGATAATGCCAAAAATAGACTGTGTGGGTCTGAAACTTTGGGAATtgttatctgtttttgtttttacagtgacaCTAGTTATCTAACCAGTAGttatgttttgagaaataatacaGATTTCTAAGGTCATGATATGTATTTATAGTGTCAACAGCTATCACATGGAAACACTGTAAATGCTAAAACCCAGTATTTCAAACTCAATTTCAAAGAtgtaaatgtttaaactgtatgttggggaaaagaaagaaacattttaataaattacaaagtACAAACATC

Function

GO:

id name namespace
GO:0043461 proton-transporting ATP synthase complex assembly biological_process

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050411-18 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton-transporting ATP synthase complex assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency, nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2).

Ensembl:

ensembl_id ENSDART00000134297

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011117 lncRNA downstream 182881 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00011116 lncRNA downstream 683071 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00010158 lncRNA downstream 712299 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011114 lncRNA downstream 1443803 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00010174 lncRNA upstream 1689 18413442 ~ 18414516 (-) True XLOC_005297
TCONS_00011119 lncRNA upstream 41454 18453207 ~ 18454407 (-) True XLOC_005298
TCONS_00010204 lncRNA upstream 866637 19278390 ~ 19282009 (-) True XLOC_005315
TCONS_00011120 lncRNA upstream 1645218 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00011121 lncRNA upstream 1903242 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00010167 mRNA downstream 2023 18381982 ~ 18408588 (-) False XLOC_005296
TCONS_00010169 mRNA downstream 2045 18382288 ~ 18408566 (-) True XLOC_005296
TCONS_00010168 mRNA downstream 17203 18381985 ~ 18393408 (-) False XLOC_005296
TCONS_00010166 mRNA downstream 513477 17889465 ~ 17897134 (-) True XLOC_005294
TCONS_00010165 mRNA downstream 547144 17815725 ~ 17863467 (-) True XLOC_005293
TCONS_00010175 mRNA upstream 56313 18468066 ~ 18519822 (-) False XLOC_005299
TCONS_00010176 mRNA upstream 56816 18468569 ~ 18483348 (-) True XLOC_005299
TCONS_00010177 mRNA upstream 139844 18551597 ~ 18560500 (-) True XLOC_005300
TCONS_00010178 mRNA upstream 153800 18565553 ~ 18568834 (-) True XLOC_005301
TCONS_00010179 mRNA upstream 159702 18571455 ~ 18578432 (-) False XLOC_005302
TCONS_00010161 other downstream 703710 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 1412169 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 1508852 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 1664064 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 1664295 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010183 other upstream 326660 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 1777416 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2163887 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3158030 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 3261196 21672949 ~ 21680620 (-) False XLOC_005333

Expression Profile

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