RNA id: TU52802


Basic Information

Item Value
RNA id TU52802
length 3300
lncRNA type read_through
GC content 0.38
exon number 3
gene id G35843
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12567184 ~ 12672206 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttgttttttttttttttttttTTTGTTCAATTTAAGAGCTTGCAAGTGGCGTCTTCAGTTGCAAGCGAGAGCAAAACCGTCCAGTCTGCCTTGGTTTGCACCTGAAAGACCCACCAGAAAACCtcctttttattgtgaaaagatAAGAAAACACACCATGTTACAAAGTGGAGCATCATATGATCATAGCGTGACTCGTCCAAGGTTGAGTTCTGAGATTAAGACTGTCTTCCCAAAACTTGTGAGAAAGCGGCTTTGGTACGCGATGAGCGGGAACCGAGTCCAAGATATGAGAGAACAAGCAATCCTTGAAGACATGCACACCCATCTGCTCTGGAAATTTCCATCATGCAGTCACTTAATGTCAACATTAAATCATAGAAAATCAtagaaaatcatgtttcatCTAACAATTATCGATTCGGACCTACTAGAGTTTGTTTGACCCAAACCATGACCACCTCTTCAGCTGGGTCTCGGTACAGTTGTTTAGTTACGCAACATAATCAATGATGTACATCCGAATAAATGAGACAGAGGGAAGTTCACATCTGAAGAGCATTAAAAAATGGACTGGAATGCAGTCAAGTCAGTCTTCTTGTTTGAGCTGCCCGGAGGCATTGCAAATATGGCTACTGAGTACACAAACTTTCCTTGAAGGAATTTATTTTAcctcaaatataaaaactttacaGCTGAGGGGATGAATGAATCTCTAAACTGTTAGTTTTACTAATAGGAGTTCCAAACTGGGTGGGAATAATCTTACAAAATACTCAGGGgtcttatttataaatgttatgttttgggCATATAGTAAAAGTGCTTAGAGTCACATCAGAGTCTGGGCAGGCTTTTACAGagttttacaggtttttaaaagaataatgcaTAAAGAATAATCTACCTGCACTTCGATAATAGAGACAACTCTGTAATCCAGcccacctgaaaaaaaaaattatgtaaaagcaGGATGAAACCTTGGGTGGAGCAAACATCCTATTCCTGTGGATGGTATGTAAGTAATTCATATTAACAAAAAGCGGAACTTGCGACCACCCTTTTTGCCTATTGTGACATAAATCTTGAGCgggaaagtaaaaaataaaggtcAGCATGAATATAAGTTTGCAGACAGTTGTTGATTAAACTCATCTGGCCATTGCatattctctctttctcgtttGAGTCTAGTGATCTCAGAATAAGAACTGTACATGACATTCTTCTTAATGTAACAAGTGTTATGTTGATCTAATTAATGCTGTGTATAGTTTTTTGGGAATTACAGAAATGtgattagtgtgttatgtgtatgcCTTCTGAACAGTGGACGTGAAGGACTATAATGCGATAGCTTACCCAAGTactgaggagctaaaccattaaGGGCTTCATAAGTAATAAGTaagatttgaaatgtttatataaagtttAATACATGAAGGCAGTGCAATAGAGATAAGATGTGCAATGCTGATAGAAGCGGGCTAATGTGGTCATACTTCCTGGttgtaatgtttgtaaaaatacatgcatttgtaaTATAGGCTATTCATTACATTGCAGCCATACATAGACTATATAATATACTTGCAtattcttaaatgtataataaacaaaactgtataaaactttacagtattataaaaaaaatgcaaaaataatatgaaacaatcaacaaacaaacagcaaataaTCCTCTACAAggttaatattcatatattgaTACACAGTACATAGTGGGTTAGTGTTTATGTATCAATGCTTATTCTAGCAGTAAGTGTATGCGATGTAGTGTATCAACAAAATCCCCATTCAACTAGAAAGCTAGCATTAAGTTTGGattagtaattttaaaaaatggcccacttgtgtgttttaatacagAAATTACTGCCATGCATTTTCTTTAGAATTGCTACACCAGTCTTTAATTCCTATGTACAATTGACAGGGCATCATTTCCTATGCCTGGGTCATTCATCCATCCCTTCACTTAGTATATTTACTAGGCATGTTCCACTTGATCTGCAGTATCCTCTCatggtattttaatgtaatgcacTGGTCATTCTGTGCAGCCTCTCTTCGAGTTGAATGCATCTGCAGACTTGAAATGGATGTGTCAGACAAAGGAGACCTTCAAAAAATGCAGTGATGGGGGTCTTCCAGGAATATGATTGAGAATTCTTACTCTAGAGTCATGGGGGTTCAGGGGTCCTGTTCAACTTTACAAAACTCCTTCACAAAACTCCACACAGACAGGCCTGGCTCACCTGGGACTTGATCAGGACAACATTGTCATCCCCTGATAAACCCCCCTTCGGCACTGACCTGGGTCATGTGCCATCCACTCCATTTTAATACTGCATCCCAATAACAAATAGATGACTGGGCTGGTAAAAGAGTGGGCTGTGGCCAGCGCAGTAGCTGCTGGAAGTCCGTATGTCAACATAGTTTGACTCAGGCTGTTGCTAAGAGTGGCTTGAAGCAAGGTTAAGAAGATCTGAGGGCCCCAGAACACAAAGAAGGCAATCTTGATAGCGCAGATGATCTGTGCTTGCTTCTTGCATACTTTACACGTTCTATGAGCTGATATCAAACAGCTAAGAAACATTATCAAAGCTGGCACAAGAAGCCCAAAGAGAAATCTCATGATAACAACCACTTTCAGCCTTGTAATGCCATCTGGAGTTGTTTTCAACTTATCCATGTCATAGTCATCAATGCACTGAGAAGATCGGATCTCTCTGGAAAACAGCGAAGGACATGCCAAAACTGCTGCAATGCTCCAGGACAATGAAATCAGAATAATGTAACAATTCTTGCAATTTTTGGACAAATCCTTTTTTGAAAAAGCAGAGCTAATGCTCCAGAGACTGAGCATGGCTGCTGTGGAGAACATACTGCCGTAGGTGATATAGGATGACAGCTTGCAGGTTGCTTGTCCGTATTCCCATATGAAGTTATTGTAAACATAGAGAAActgcaaaacaataaatgcacTGGACACTAAGTGCGTTACAGCCAATGCCATAATCCAAATGGCAACCGTCTGAGATTTCCTGTTTTTCAGGCAACTGTTGACAATGACAATGAAGTTGAGGGTGACACCGAGGATCAGGACAAGAGAATATGTAACTAAGTACATCATCCGGATCTCATGTTGGTTCGGATTGGTTATGTTTTCTGATACATTTGATAGTTGTATGCTTTGAAGTTCTGTGATTATAGCATCATAGTCCAGGGTACTGTTTTCAACGGACATTTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52820 lncRNA upstream 16004 12548666 ~ 12551180 (+) True G35855
TU52759 lncRNA upstream 23096 12536738 ~ 12544088 (+) True G35834
TU52651 lncRNA upstream 208386 12356438 ~ 12358798 (+) True G35756
TU52630 lncRNA upstream 279806 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 282062 12284445 ~ 12285122 (+) True LOC122345281
TU52809 lncRNA downstream 95742 12767948 ~ 12768550 (+) True G35847
TU52890 lncRNA downstream 210054 12882260 ~ 12882512 (+) True G35903
TU52891 lncRNA downstream 212799 12885005 ~ 12885284 (+) True G35904
TU52892 lncRNA downstream 213125 12885331 ~ 12885934 (+) True G35905
TU53143 lncRNA downstream 436426 13108632 ~ 13108853 (+) True G36062
XM_043238505.1 mRNA upstream 27364 12532379 ~ 12539820 (+) True pik3ip1
XM_043240357.1 mRNA upstream 38394 12514013 ~ 12528790 (+) True si:ch211-225b11.4
XM_043239230.1 mRNA downstream 8475 12680681 ~ 12683727 (+) True ficd
XM_043238274.1 mRNA downstream 31146 12703352 ~ 12705245 (+) True iscu
XM_043240744.1 mRNA downstream 122013 12794219 ~ 12797438 (+) True dao.3
XM_043240743.1 mRNA downstream 125918 12798124 ~ 12802870 (+) True LOC122346075
XM_043240742.1 mRNA downstream 131583 12803789 ~ 12807351 (+) False LOC122346073
TU52818 other upstream 51076 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 311512 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 311512 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 625112 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1504870 11046480 ~ 11062314 (+) False map7d2a
TU52846 other downstream 31165 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 131746 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1311891 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1618214 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1627837 14300043 ~ 14305304 (+) True LOC122345142

Expression Profile