RNA id: TU52820



Basic Information


Item Value
RNA id TU52820
length 1466
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G35855
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12548666 ~ 12551180 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cTTCTACAACATCAACAAACTTCCAGCGCTTTGACAAAACAGATGCATGTCAATTTAGAACGAAGCTCCAAGTGTCATATggattatgatttaaaaaacacacaaaagccaTATAACAAACAGCCTGTTTCTAGAAATAGTGTAAATTCAATGCACGACCAGGTTAAAGTAATTACCGTGGTATGAAAGGAGTGTCACTCTATGTGCTGGAACAAGCTATAGTACAAGTTTGTGTTCCAAATGCTTACGCATCACAAATAGTCACATTGCTTCAACAAGTTAACATTGGCACAATTTCACCTCACCTGCAAGCTAATAGCAAGCATGAaaatgggggggaaaaaaggaaagtaCCTCCTCTTCCATCAGAGTTGACACCGGGAGTCCATTGATCTCTAGGATTCGGTCCCCAACATGGATGGCGTTCCGAACCTCTGGACTAATATGCATCCCTCTGACCCTGTAAGGATACAATTTTGGTGGATTTCCATTATGACAAAAAAGGTTAAGAATGATAAGAGAAATTTCATAGCTTTATGTTATGGCATTACacctaaataatacaaaaagaaagTGGCAGTTTGTGCCACCGCAGTCCAACATAGGCAGTCATATCACCACAGTTATGCAACACATTCCATGTGTCTCTGGCATTGGGTGTGGTGGCATTGTGGTGAATCTTCGAGGTGATAAATAACTTGAGGGAGACTTATTATTCCAAAAGTTTCTCAGCATATTCAGCTTCATCGAACCAGGACTCAAACGAAGATCTCAAGCATTTAATGTATTACATGTTAATTCCACGCCTCTACTTACTCTTTGACCTGGACGCTGGCAGTGGCACTTGTGCAGTCTCTAATCACGGTGACAGAGAAACCTCGTTTACCATTGGTGGCAGCGGGCATGGACACAAGAGTCACTGTGTGAGGGAGCAGGTCCGATGGAGAGTCGACTAAACAACGCTTCTCCAACATTGGCGTCAGGACCACCTGCTTGTAGCATTTACCACTgcgCAGTAGAGTTTAGTTCGTTCCACTAAGGCATAGGTATCCCGATCCTCAATCACCACCCTGCAGCTTAAACACACGAAGCATTCGGGGTGGTATTTATAGTCTCCTGCCACCTGAAACACACCAATGCCCAGTGCACATCAGAAAACTGCCATAATGCCACACGATTTCATTCCTAAATCCACAATAGACGTCCCAAAAGATAATCCTCAGTGTCAGCCCTGACAGTGGTCCAGAAATAGTCTTTCTGGGATACTCGTGTGCGCTGCTGCGTGTATGCAGATTGTTCTCTGCCAAGCCCAGGCGTGGTGGATCATGCCTTCATTGTGCTTCATCTGCTTTATGTCGACGTACGGTCTTCACTCAGTCTGCGTTCTTTGACGATGACGCTGTCTTTTTCAGTAACACCTGCAAGTGTCTGGGACGGTCTGTTATCAGAAGTGACATAAGACTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52759 lncRNA upstream 4578 12536738 ~ 12544088 (+) True G35834
TU52651 lncRNA upstream 189868 12356438 ~ 12358798 (+) True G35756
TU52630 lncRNA upstream 261288 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 263544 12284445 ~ 12285122 (+) True LOC122345281
TU52639 lncRNA upstream 264917 12279235 ~ 12283749 (+) False LOC122345282
TU52802 lncRNA downstream 16004 12567184 ~ 12672206 (+) True G35843
TU52838 lncRNA downstream 89087 12640267 ~ 12641645 (+) True G35864
XR_006251058.1 lncRNA downstream 94104 12645284 ~ 12647088 (+) True LOC122345920
TU52801 lncRNA downstream 98841 12650021 ~ 12653283 (+) False G35843
TU52809 lncRNA downstream 216768 12767948 ~ 12768550 (+) True G35847
XM_043238505.1 mRNA upstream 8846 12532379 ~ 12539820 (+) True pik3ip1
XM_043240357.1 mRNA upstream 19876 12514013 ~ 12528790 (+) True si:ch211-225b11.4
XM_043240359.1 mRNA upstream 19876 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240360.1 mRNA upstream 19876 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240358.1 mRNA upstream 19876 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043238703.1 mRNA downstream 13012 12564192 ~ 12579711 (+) True si:ch211-225b11.1
XM_043239476.1 mRNA downstream 44097 12595277 ~ 12639274 (+) True wscd2
XM_043239477.1 mRNA downstream 44097 12595277 ~ 12639274 (+) False wscd2
XM_043239230.1 mRNA downstream 129501 12680681 ~ 12683727 (+) True ficd
XM_043238274.1 mRNA downstream 152172 12703352 ~ 12705245 (+) True iscu
TU52818 other upstream 32558 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 292994 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 292994 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 606594 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1486352 11046480 ~ 11062314 (+) False map7d2a
TU52846 other downstream 152191 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 252772 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1432917 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1739240 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1748863 14300043 ~ 14305304 (+) True LOC122345142

Expression Profile