RNA id: TU52846



Basic Information


Item Value
RNA id TU52846
length 955
RNA type TUCP
GC content 0.41
exon number 6
gene id iscu
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12703352 ~ 12705245 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTGTAGTCGGTCATCATGGCGTTAGCAGCTGCAGCCAAGCGCTGTGCATTTTCTGTACTTTTCAGTAGATCTTTGGCAGTACCGGAGCTCAGAATAGCCTGTTCGTATCATAAAAAGGTGGTGGACCACTATGAGAACCCCAGAAATGTTGGTTCTCTAGACAAGAATGCCAAGAACGTAGGCACTGGCTTGGTAGGTGCACCTGCATGCGGGGATGTTATGAAACTACAGATTCAGGTGGACGAGAATGGCAAGATAGTAGACGCCAGATTCAAAACCTTTGGCTGTGGCTCAGCCATTGCTTCCAGCTCACTGGCTACAGAGTAGGTGAAGGGAAAATCGATTGATGAAGCACtgaaaatcaaaaacacagagaTTGCCAAAGAACTTTGTTTACCGCCAGTCAAACTTCATTGCTCTATGCTTGCAGAGGATGCTATCAAGGCTGCATTAGCAGACTACAGACTCAAACAGAAAGACGACAAGGAGACGTTGGTGGAAGCTCGAAATTAATGTCCTCATTCACAGACGAGTCACCGCCTCCCACTCTTATTGTGACTCcgaaatattttatactttatatgcTTTCTGAggataaaataaacacattagcAAGCGTATACCATTGCTACTCTGTTCACGCTGCATTTGCATTACTGGTTTGAAGTGGCTTGCATTTACCGACTGTGAAAGATCTTTTGGAATAAAGTTTTCTCCTGTATCTCTGAATCACGCACATGAAATGTCCTCTATATCAGCTCTATATACTGCAAGTTTGTAAATGCACTCTGCTACACTGCATAAAAAGGAAAGTAGGggatttgaaaaatgtttatttgtttaggtTTTCAGAGGGATCATTATAGTTTTGGCAGTGATTTGTTGGCAAAAAAAACGAATTTGACCTTGGTGCTGTATTATTTGTTGCAAAAGTAATAAAGATGTAAATATTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52802 lncRNA upstream 31165 12567184 ~ 12672206 (+) True G35843
TU52801 lncRNA upstream 50088 12650021 ~ 12653283 (+) False G35843
XR_006251058.1 lncRNA upstream 56283 12645284 ~ 12647088 (+) True LOC122345920
TU52838 lncRNA upstream 61726 12640267 ~ 12641645 (+) True G35864
TU52820 lncRNA upstream 152191 12548666 ~ 12551180 (+) True G35855
TU52809 lncRNA downstream 62707 12767948 ~ 12768550 (+) True G35847
TU52890 lncRNA downstream 177019 12882260 ~ 12882512 (+) True G35903
TU52891 lncRNA downstream 179764 12885005 ~ 12885284 (+) True G35904
TU52892 lncRNA downstream 180090 12885331 ~ 12885934 (+) True G35905
TU53143 lncRNA downstream 403391 13108632 ~ 13108853 (+) True G36062
XM_043239230.1 mRNA upstream 19644 12680681 ~ 12683727 (+) True ficd
XM_043239476.1 mRNA upstream 64097 12595277 ~ 12639274 (+) True wscd2
XM_043239477.1 mRNA upstream 64097 12595277 ~ 12639274 (+) False wscd2
XM_043238703.1 mRNA upstream 123660 12564192 ~ 12579711 (+) True si:ch211-225b11.1
XM_043238505.1 mRNA upstream 163551 12532379 ~ 12539820 (+) True pik3ip1
XM_043240744.1 mRNA downstream 88978 12794219 ~ 12797438 (+) True dao.3
XM_043240743.1 mRNA downstream 92883 12798124 ~ 12802870 (+) True LOC122346075
XM_043240742.1 mRNA downstream 98548 12803789 ~ 12807351 (+) False LOC122346073
XM_043240741.1 mRNA downstream 98713 12803954 ~ 12807351 (+) True LOC122346073
XM_043240738.1 mRNA downstream 115364 12820605 ~ 12826178 (+) False usp30
TU52818 other upstream 187263 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 447699 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 447699 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 761299 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1641057 11046480 ~ 11062314 (+) False map7d2a
XR_006251084.1 other downstream 98711 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1278856 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1585179 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1594802 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1594802 14300043 ~ 14305304 (+) False LOC122345142

Expression Profile