RNA id: TU52974


Basic Information

Item Value
RNA id TU52974
length 2667
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G35949
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12532390 ~ 12537802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTTATATATGCATTCAAGCTAgactgtaatatttcacagtgacGCACTACAGACGGAAGGAGCGATTTGTATTTGTCTCCAGCATTGCCTATTTTTAGGGCTGAGATATAAATGCTCTCTGGTGGAGAGGACCAGCTCTAATTCGTCACTCGCTGCCAAGGAAGAAGCTGATCTCGATCACTATCCTTTACCGTTTCATGAGAGCTGAACGCTGGAGAAATCTCATATTACTTAACAGACCCCCGTCTGTTTATCCATCTCTAGTCATTCAGACTGAGCATGGCAGACTTGCGGCGTGTTATATAATCCTCCTACACTTACCCAGCACTTTCCTGCCTGTGTGTCTGCAGTAAGCTCTGCTTTATCACAACTGAACCAAACACTACCGCTCCCGCAAAGAGTGAAGAGTTTGAGATCCATGTGCCGTTACATCATAACATGTTTCCTGTGGGTGACACTGTCCTAATATTATAGGTTAACCCTCTGCTCAGTCCAACATCCTGCCCCTGCTTATTAATACTGAGCCAATTAATCGTTAGATAAACGATGACATACACACCTTATCAGCTGACGCACGAGTACATGCTGCCCAAGGCTGCTAAGTCCCCTGCCAAACGTTTTACAAGATACTAGATACTTTTactgatttttactgtaaactATAAGCACGTAACTGTGATATATTGTCATTAGCACAACATATATGCAATTACAAAAACCTATTTTTGGACCAAcaagattttttatattgtgaaatgtgaataacaattaaacagcttttatcttttattcattGTAGTATTTGTTACAGTgcctttaatatattttattaaataatttattactgtatttatttctttaaaaaaaaaaaaaaaaaaatgatgatcacggaaatgacaaaaaagtaaatatcagaggaaaaaaaacatctgttgattttggggtgaaatgtaAGATTGAGATGTTAAATGATGTTAAAACAGTTGATATCTCCATTGATACCAGCTTTCTGAGTCCTCCTGATCCTCCCCAAACCCAACACCCACTTCTGAACGTCCAAACAACCTCCTAAATATAGGCAGTCAAGATGCCTCCGATATCTGCACCCTCTCACCATCCCTCTCTCATGTGTCTAATGACATTAAAACGACAGTGTTACATGAACTTGCTATGTGCTGCCAGCTAATGCCCGGTCTTGTgatctgtaacactttattccCTTGAAAGCATGTAGTGAACCCAATGACGTCCTTTATCTCTGTTGCAGTCGCACCTCTGAGCTACTCTGAGTAGATCAAAACCAACATCTCACTGTGAACTGTACAAGCACTGGCCACAGACCTCATGTCTCTGTTCTGAAGAACTGAAGTGCCGGTTTTGCCTGGATTTTGGTGTGTTTTGCCACTAAGCTATGTCAGCCTTCTATTCTCCATAAGTGCGCACTGTAATGGGAAATTGTGTACTGACCGTTTGTAGAAGTATCCCATCGTGATGCCGCCCCCAAGTAGGATGATAATGGCCATCATGAAGACGGCCAGAACATAACCTGCCAAGGTAGCAAAGACAACCAATATACCCGATGAACTTCTCGGTTCTTGGATGCAGTTTGATGCTTGAGTCAACTCAACACATACCGAGAGTCCCGAGGTCTTTCTTCCTCTTGGGTCCACTCCTGACCTGCTGTCGGACTCCCTTCACGGGCTGCACCGCCGCACCCTCCACCTGCGAGGGGAAGGAGTCTGCGTTTTCGAAGGTCTCCACCATCCTTGGGGTGAGTCCCTGAGTGGGGGCCGACTCTTCTGGAGCCGTGGCTTCTGTGGAGTTTTGGTCCTTGGCATGTCCTAATATCACACGCTTCTTTTCTGGACGCTCCATCGGATGCGGACACATAGCACCAGGGCTTCTCTGAACCATCTGGGTTGCGACAGAAATTGTGATCTCCAACATCTggcaagaataaaaacaaaacaatgaacctttaaaagcagatttaactgatacttaatttttttgttttgttttgcggGAGCATGTGTTTTTGAGTTGTACCGAGCGTGTCCCACATGCACATCCCAGAAATGTCCTCTTCTGGATTACAGAAGAGTGATTGCTCAGCTTTTTGAGTTGGGCTCATAATATCATCTGGGCAGCATGCCCATTTCATAAAGAACCATAATTTACAAAATCTATAATCGGCAACATTGACAGTTTGCATACTGCACTCTCAAATGAATTCATACTGTCTGTAAATATAGCttaatttttctcaaatatgattctattatttttttgcatttaaaatttgataatgaaatgcacaaaaaacataatgaaaagtAGAAGCATAAGTTACCTGTCTGCGAGTTTAGACTCTTCCAATTGAGGCAGATATTCCCTGTGGATGTCTTCTGTTGAATTCCCCTATAGTCTCTTCAACAACAGACCAACAGTCCACCAAACCAGAGCTCAGCACAAACCCAAAGTACAGCAGTTGAAACATCTTCATTCGTCGATGCTGTTAACAACAAGAagtagtctttttttaattattacttatatGACGAATAGAAAAGAAAACGATGGGTTTAATTGGAAGAGCCTGTGGTAAAACGAGCCACACTGCTCTCCACACACACCGCCGTCGTGCTGTTGTTTTGAGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52941 lncRNA downstream 16840 12506761 ~ 12515550 (-) False G35928
TU52943 lncRNA downstream 22394 12463906 ~ 12509996 (-) True G35928
TU52931 lncRNA downstream 81625 12448214 ~ 12450765 (-) True G35923
TU52930 lncRNA downstream 87170 12443787 ~ 12445220 (-) True G35922
TU52729 lncRNA downstream 275578 12255480 ~ 12256812 (-) True G35812
XR_006250996.1 lncRNA upstream 64414 12602216 ~ 12606938 (-) True LOC122345380
TU53008 lncRNA upstream 99388 12637190 ~ 12639377 (-) True G35966
XR_006251055.1 lncRNA upstream 342259 12880061 ~ 12884157 (-) True LOC122345905
TU53066 lncRNA upstream 375824 12913626 ~ 12916013 (-) True G36004
TU53068 lncRNA upstream 375824 12913626 ~ 12916814 (-) False G36004
XM_043240361.1 mRNA downstream 18425 12510566 ~ 12513965 (-) True si:dkey-174n20.1
XM_043238310.1 mRNA downstream 104008 12412341 ~ 12428382 (-) True hs3st1l2
XM_043239593.1 mRNA downstream 122722 12396282 ~ 12409668 (-) True cds2
XM_043239594.1 mRNA downstream 138348 12381364 ~ 12394042 (-) True arhgap25
XM_043239263.1 mRNA downstream 168675 12356836 ~ 12363715 (-) True LOC122345273
XM_043238504.1 mRNA upstream 2482 12540284 ~ 12560679 (-) True limk2
XM_043239479.1 mRNA upstream 102575 12640377 ~ 12642522 (-) True LOC122345379
XM_043239478.1 mRNA upstream 104854 12642656 ~ 12644497 (-) True cmklr1
XM_043240346.1 mRNA upstream 131148 12668950 ~ 12673658 (-) True LOC122345863
XM_043240345.1 mRNA upstream 131148 12668950 ~ 12673312 (-) False LOC122345863
TU52956 other downstream 26432 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 212705 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 363063 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 716580 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 879763 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 516042 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 837827 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 1041259 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 1121275 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 1122172 13659974 ~ 13699226 (-) False lrch2

Expression Profile