RNA id: TU53068



Basic Information


Item Value
RNA id TU53068
length 1750
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G36004
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12913626 ~ 12916814 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCATGCAACTGTCCGTTTTATTGACtgtgtattgttttaaaatatcacaaacgAAAACCTCAGTTCATTGAACCAGCACTACAGAGTGCAAAGCCCGGGTTTAAGAACGAGAATAGCAAACAGGAATTCTGAATTAAGACACTGTAGTTGTTTAAATGCTTGTCTTTAAGTGACCAAAAGTTGCCGCGGGATGTGGGTTTCCACTTCGCGTCGCACAAACTAATCGACACGGTTCTGTAAATTAAGTTACTGTTACgttaaaaacagcaaacatcTCCTGGCGAATCTTACCAATAGAAAACATGACTAGCTAGCTTTAAAAGATGTGTATAGAGGCTAAACACAGTAGATAGCCTGTCAAGGCCAGATTGCAGCACGAGAAAATTACTTTGTGGATAAATGCGAACAAATAGAGACGTTACCTAAGTACGTACTGTAACTCCTTCCTGATTGCCGGTTAGAGACACCTGAGACCGATGAGGAAAATACAGCGACGCTCTTTTGCGTCTGACGTCACGACGGGTTTAACCCACTTTTCCGCTGCTGTTAGAGCATCCTACCGTTAGATGGCGACAGATATCTTCCTGTATAAAAACAGGGTTGGCGCTTACCAATGAGCAATTAAAAACGTTGCCTGTAGCATTATtgctaactttattttttaacattattcattttagttcttCAACTtaaacgtttttattatttacacattttacgttgattgttttgtgtatttatgttttatccCAGCTTTGTTTCACTCATCAGATGATGTTAAATATggacacaataaaacaatactggttttattttcagtgtgaaCAGAAGTGTTCATGGGGCTTAACCTTTATATCATGAATGACATAACTAGGATGCATTAGAGTACAAAAAATTTACACagaacaaacatttgtgaaaatgaaagttAAACTTGAAACTACGCAGATGCTTCACGCTGTGTCCTTGCGTTTCGCTTTGTTTTCGAGGTTCAGTGGGATGGGGGTGGTTGTAGTAGATGACAAAAGATGGTTGCATCtcatttaaaccttttaaagATGGAGATATACTCCTTTACATCATCAGGGGAACCCAGCACTACAGGAACCCTCTGGTGGATTGAGTCAGGTTTGATGTCTAGAACATTCATGGCTCCTGTTGTTGCCATACCGCCGGCCTGCTCCATGATGAAGGCCATGGGGTTGCACTCATACAACAGCCTaCCTTGCCCTTGGGGCTCTTGATATTAGCAGGATACAGGAAAATTCCACCATAAACCAGAGTCCTGTGCACttctttttcagataTTCCGTCACATCTGGGTAAAAATGTGCTGCGTAGCCTTCATTCAAGCTATAGATCTTTCCCTTCTTCTTAATCTTCACATCCCGGTCTACAAGTATAAACTCACCGATAGCCTAACGATGGAGGTGGAAAGAATGCATAAAGATTAAGTGGTAATGCagctatttaaatttattagtaCGTAACATAATTCTGACTTACAGGATCGAGCATGAAGCAGTTGACACCCTGGCCCGTGGAGAGAACCAGCATGGTAGCACTGCCATAAAGAGCATACCCTGCTGCCACAATGTCTCTGCCACTCCGCAAGGCATCCTTTTCTGAGGGCTCATCATCAGTTTCCTGGATATCCTTTCTGTAGACTGCAAAAATGGTTCCAATAGAAGCTAAGCAGTCAATGTTTGAAGAGCCATCCAGAGGGTCAAAGCAAACCACGTATTTGCc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251055.1 lncRNA downstream 29469 12880061 ~ 12884157 (-) True LOC122345905
TU53008 lncRNA downstream 274249 12637190 ~ 12639377 (-) True G35966
XR_006250996.1 lncRNA downstream 306688 12602216 ~ 12606938 (-) True LOC122345380
TU52974 lncRNA downstream 375824 12532390 ~ 12537802 (-) True G35949
TU52941 lncRNA downstream 398076 12506761 ~ 12515550 (-) False G35928
TU53073 lncRNA upstream 7929 12924743 ~ 12926462 (-) True G36009
TU53076 lncRNA upstream 16657 12933471 ~ 12933779 (-) True G36012
TU53124 lncRNA upstream 137319 13054133 ~ 13054857 (-) False G36047
TU53126 lncRNA upstream 138755 13055569 ~ 13056705 (-) True G36048
TU53144 lncRNA upstream 191885 13108699 ~ 13108948 (-) True G36063
XM_043239055.1 mRNA downstream 1863 12894584 ~ 12911763 (-) False ttc33
XM_043239056.1 mRNA downstream 1882 12894584 ~ 12911744 (-) False ttc33
XM_043239054.1 mRNA downstream 1882 12894584 ~ 12911744 (-) True ttc33
XM_043240130.1 mRNA downstream 49928 12844251 ~ 12863698 (-) True map1b
XM_043238396.1 mRNA downstream 72690 12835956 ~ 12840936 (-) True ptcd2
XM_043240166.1 mRNA upstream 26511 12943325 ~ 12954845 (-) True eda2r
XM_043239671.1 mRNA upstream 103532 13020346 ~ 13050778 (-) False ophn1
XM_043239669.1 mRNA upstream 103532 13020346 ~ 13050778 (-) True ophn1
XM_043239670.1 mRNA upstream 113330 13030144 ~ 13050778 (-) False ophn1
XM_043238349.1 mRNA upstream 201553 13118367 ~ 13150538 (-) True rxfp2l
TU52956 other downstream 407668 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 593941 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 744299 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 1097816 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1260999 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 137030 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 458815 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 662247 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 742263 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 743160 13659974 ~ 13699226 (-) False lrch2

Expression Profile