RNA id: TU53143


Basic Information

Item Value
RNA id TU53143
length 222
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G36062
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13108632 ~ 13108853 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttatatagcgcttttaacaacacaggttgcatcaaagcactgcacattataatgacagggatgtataatgatgagagtgaccaatttcttattaaatgcagagacggtctttgtagtcaattcaacgatagtcactagaagttaagtgtccccaaccaagcaagccagaggcgagagcggcaaggaaacaaaaccccatgcatacagaatggaggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52892 lncRNA upstream 222698 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 223348 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 226120 12882260 ~ 12882512 (+) True G35903
TU52809 lncRNA upstream 340082 12767948 ~ 12768550 (+) True G35847
TU52801 lncRNA upstream 455349 12650021 ~ 12653283 (+) False G35843
XR_006251001.1 lncRNA downstream 190902 13299755 ~ 13312652 (+) True LOC122345423
TU53187 lncRNA downstream 190956 13299809 ~ 13311692 (+) False LOC122345423
TU53198 lncRNA downstream 203208 13312061 ~ 13312385 (+) False LOC122345423
TU53205 lncRNA downstream 215180 13324033 ~ 13324383 (+) True G36109
TU53255 lncRNA downstream 411120 13519973 ~ 13521608 (+) True G36140
XM_043239729.1 mRNA upstream 1060 13066436 ~ 13107572 (+) False stard8
XM_043239728.1 mRNA upstream 1060 13069355 ~ 13107572 (+) False stard8
XM_043239727.1 mRNA upstream 1060 13069356 ~ 13107572 (+) True stard8
XM_043239730.1 mRNA upstream 1060 13076369 ~ 13107572 (+) False stard8
XM_043240839.1 mRNA upstream 52272 13051667 ~ 13056360 (+) True yipf6
XM_043238327.1 mRNA downstream 42768 13151621 ~ 13157237 (+) True steep1
XM_043238511.1 mRNA downstream 225902 13334755 ~ 13338138 (+) True nalf2
XM_043240760.1 mRNA downstream 233293 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 233296 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 233296 13342149 ~ 13372469 (+) False eda
XR_006251084.1 other upstream 301416 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 403391 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 592524 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 852960 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 875244 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1181567 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 1191190 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 1191190 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1538636 14647489 ~ 14651911 (+) False fgf5

Expression Profile