RNA id: TU53198


Basic Information

Item Value
RNA id TU53198
length 325
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id LOC122345423
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13299755 ~ 13312652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAAACCATTTgtacaaaaaatagaaaaaagtaataatgcatttgaatgtAATGAATGTAGCTACATGCTAACACGAACATGTAAACATTGTCAACAGTTTGACAAGAGGTTGGTTTTTACTGCTTACTAAAACGATGTACTTTCCTTTATCATTCTTAGTGAAGAATGTACCCTTAGTGTAAAGTGGAATAGTGTGAATTGGCATTCAACCTCTGACTGGCTCCTCTACActggtgtgtttgtgagagagaaagagagagtgaagtGAATGGAGTTAGTAAGCTTAATGATGTTGCAGTGCTAAGCTGTTTCTCTCATTACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53187 lncRNA upstream 369 13299809 ~ 13311692 (+) False LOC122345423
TU53143 lncRNA upstream 203208 13108632 ~ 13108853 (+) True G36062
TU52892 lncRNA upstream 426127 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 426777 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 429549 12882260 ~ 12882512 (+) True G35903
TU53205 lncRNA downstream 11648 13324033 ~ 13324383 (+) True G36109
TU53255 lncRNA downstream 207588 13519973 ~ 13521608 (+) True G36140
TU53263 lncRNA downstream 254592 13566977 ~ 13580798 (+) True G36141
TU53304 lncRNA downstream 335541 13647926 ~ 13648538 (+) True G36168
TU53333 lncRNA downstream 408400 13720785 ~ 13721566 (+) True G36191
XM_043238327.1 mRNA upstream 154824 13151621 ~ 13157237 (+) True steep1
XM_043239729.1 mRNA upstream 204489 13066436 ~ 13107572 (+) False stard8
XM_043238511.1 mRNA downstream 22370 13334755 ~ 13338138 (+) True nalf2
XM_043240760.1 mRNA downstream 29761 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 29764 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 29764 13342149 ~ 13372469 (+) False eda
XM_043238676.1 mRNA downstream 64152 13376537 ~ 13379768 (+) True wnt11f2
XR_006251084.1 other upstream 504845 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 606820 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 795953 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1056389 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 671712 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 978035 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 987658 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 987658 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1335104 14647489 ~ 14651911 (+) False fgf5

Expression Profile