RNA id: XR_006251001.1


Basic Information

Item Value
RNA id XR_006251001.1
length 1238
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122345423
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13299755 ~ 13312652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcttttacatttttctcagtCCAAATTATAGCTGTGAACCATGCAGATAGGAACAGAATTATACATCTGAAACCAGCGAAGTACTGGACAGATGTCACCGATTGAGCCGGCCCCCCTCCCACTGCCCCGCCTCTTCCCCTCCCTATCAAAGGCCTGGGAGTGCCGGAGCACACATCAATCATTCTGAGTGACAGGTCAAACACACAGTGTCACGCCTCAGCGCTCACCaaggacagagagagggagggaaggagggaggaggaggatgtGGAAAGGTGGATCACTGAAATAGGAGGAGGACACCGGAGAAAAGGGAGTGAGAGGGTATGATATGGACCCACTCGTGACCTGTGGTATCTCACTCGACCTCACAGTGACAACTACAGTTGAATTAATCACCGGCCGTCTCTCGTTCTGTCTCTGTCTGGACAGATGTATTACCGATGTGGACTGTAACTCATAGTAAAGGCTTTGTTTTTGGCCTATTGAGAAGCTTTAGTTAGTAGGTTTTAGTTACTCACAGGGCTAAGATGTGGATATGGTAAATCAGACTCTCACTGATGAGCAATTTGCATGCTATTCTATATGGCAGACAAGATTAGGATTAGAACATCCTAGACTATATAATTTTAGGATTAATATTACCCGAAACCATTTgtacaaaaaatagaaaaaagtaataatgcatttgaatgtAATGAATGTAGCTACATGCTAACACGAACATGTAAACATTGTCAACAGTTTGACAAGAGGTTGGTTTTTACTGCTTACTAAAACGATGTACTTTCCTTTATCATTCTTAGTGAAGAATGTACCCTTAGTGTAAAGTGGAATAGTGTGAATTGGCATTCAACCTCTGACTGGCTCCTCTACActggtgtgtttgtgagagagaaagagagagtgaagtGAATGGAGTTAGTAAGCTTAATGATGTTGCAGTGCTAAGCTGTTTCTCTCATTACTCTGACTGACATTTGAATGCTAATCCTGAATTAGCTGGTAAACTATCTAAGTGTTTGAGTGATGACTTCATCAAACTTCACTCCATTTGTGTGTGCTTGACAGTGATAGATAAGAACTGTGCTTgcattgttgtatttttgtaattggGAAAACATCTGggccttttttttcttggtgtAGGCATCAAGTAGCGGTGGGGTTTtgttgtaaacaaaaataagtcttgtccttttagtttttatgtgtgcttgtgtgtgtttatcaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53143 lncRNA upstream 190902 13108632 ~ 13108853 (+) True G36062
TU52892 lncRNA upstream 413821 12885331 ~ 12885934 (+) True G35905
TU52891 lncRNA upstream 414471 12885005 ~ 12885284 (+) True G35904
TU52890 lncRNA upstream 417243 12882260 ~ 12882512 (+) True G35903
TU52809 lncRNA upstream 531205 12767948 ~ 12768550 (+) True G35847
TU53205 lncRNA downstream 11381 13324033 ~ 13324383 (+) True G36109
TU53255 lncRNA downstream 207321 13519973 ~ 13521608 (+) True G36140
TU53263 lncRNA downstream 254325 13566977 ~ 13580798 (+) True G36141
TU53304 lncRNA downstream 335274 13647926 ~ 13648538 (+) True G36168
TU53333 lncRNA downstream 408133 13720785 ~ 13721566 (+) True G36191
XM_043238327.1 mRNA upstream 142518 13151621 ~ 13157237 (+) True steep1
XM_043239729.1 mRNA upstream 192183 13066436 ~ 13107572 (+) False stard8
XM_043239728.1 mRNA upstream 192183 13069355 ~ 13107572 (+) False stard8
XM_043239727.1 mRNA upstream 192183 13069356 ~ 13107572 (+) True stard8
XM_043239730.1 mRNA upstream 192183 13076369 ~ 13107572 (+) False stard8
XM_043238511.1 mRNA downstream 22103 13334755 ~ 13338138 (+) True nalf2
XM_043240760.1 mRNA downstream 29494 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 29497 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 29497 13342149 ~ 13372469 (+) False eda
XM_043238676.1 mRNA downstream 63885 13376537 ~ 13379768 (+) True wnt11f2
XR_006251084.1 other upstream 492539 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 594514 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 783647 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1044083 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 671445 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 977768 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 987391 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 987391 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1334837 14647489 ~ 14651911 (+) False fgf5

Expression Profile