RNA id: TU53205


Basic Information

Item Value
RNA id TU53205
length 351
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G36109
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13324033 ~ 13324383 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATCTTTCTGAAAATATGTTTGACTTGCTgctgaaaaaacatttctaattattatcaatgctcCAAACAGTGcagatatatattattatggaagccataaaaacttttttagaaTTTCAGAATTTAGAAGTtcaattgaaaatgtattcagtgGCCTCATATTGTATAACCCGTATACCTAATTTAACATCACAGTTTTATTCTGCTTTGTGTCATTTATGGTACCATATTCAATTCACTTAGAAGAATTGTATTCTTGTACACGAGCCTAAGCTTTAAAATGTGATAATGAAAGGAAATTCTAGCATGATTTAAACGTCACTGaataatcattttgttttgtatgggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251001.1 lncRNA upstream 11381 13299755 ~ 13312652 (+) True LOC122345423
TU53198 lncRNA upstream 11648 13312061 ~ 13312385 (+) False LOC122345423
TU53187 lncRNA upstream 12341 13299809 ~ 13311692 (+) False LOC122345423
TU53143 lncRNA upstream 215180 13108632 ~ 13108853 (+) True G36062
TU52892 lncRNA upstream 438099 12885331 ~ 12885934 (+) True G35905
TU53255 lncRNA downstream 195590 13519973 ~ 13521608 (+) True G36140
TU53263 lncRNA downstream 242594 13566977 ~ 13580798 (+) True G36141
TU53304 lncRNA downstream 323543 13647926 ~ 13648538 (+) True G36168
TU53333 lncRNA downstream 396402 13720785 ~ 13721566 (+) True G36191
TU53340 lncRNA downstream 407586 13731969 ~ 13732456 (+) True G36198
XM_043238327.1 mRNA upstream 166796 13151621 ~ 13157237 (+) True steep1
XM_043239729.1 mRNA upstream 216461 13066436 ~ 13107572 (+) False stard8
XM_043238511.1 mRNA downstream 10372 13334755 ~ 13338138 (+) True nalf2
XM_043240760.1 mRNA downstream 17763 13342146 ~ 13372469 (+) False eda
XM_043240759.1 mRNA downstream 17766 13342149 ~ 13372469 (+) True eda
XM_043240761.1 mRNA downstream 17766 13342149 ~ 13372469 (+) False eda
XM_043238676.1 mRNA downstream 52154 13376537 ~ 13379768 (+) True wnt11f2
XR_006251084.1 other upstream 516817 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 618792 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 807925 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1068361 12249138 ~ 12255672 (+) True G35720
TU53623 other downstream 659714 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 966037 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 975660 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 975660 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 1323106 14647489 ~ 14651911 (+) False fgf5

Expression Profile