RNA id: TU53374


Basic Information

Item Value
RNA id TU53374
length 2079
RNA type TUCP
GC content 0.43
exon number 4
gene id h3f3c
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13579061 ~ 13582290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCGCCCCGCTCCCATTGTGTGTGAGATAGTAAATACTGACACTGCCAGACAAGCCGAGCACATATTTCACCGCGCGAATTAAAACACGTTCACCTGAGGTGATATTGATTAACAATGGCCCGTACTAAGCAGACTGCTCGTAAGTCCACCGGAGGAAAAGCTCCTCGTAAGCAGCTGGCTACCAAAGCTGCCCGCAAGAGCGCTCCCTCAACTGGAGGAGTCAAGAAACCTCACCGCTACAGGCCCGGTACTGTGGCTTTGCGTGAGATTCGTCGGTATCAGAAGTCCACTGAGCTGCTGATCCGTAAGCTGCCATTCCAGCGCCTGGTTCGAGAGATTGCCCAGGACTTCAAAACTGATCTGCGTTTCCAGAGCGCCGCCATTGGTGCACTGCAGGAGGCCAGTGAGGCATACCTGGTTGGTCTGTTTGAAGACACTAACCTGTGTGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGCGGAGAGCGCGCTTAAACTCACCCCTTCTTTCTATTGccctctttatttctttctgtctctccacTTGTTCTCCTCCTGCTTTTCTTGGTAGAGTTTAGAGTATCAGTGATGGGGAGTAACTGTGTCTCAGTCTGCTAGTGCTGTCTAAATGACGCGTAGGGTACCTATATGTGCATGTAACAGGTGCTGTTgatcacacacgcgcacacacattcatgcacacaaacacacagacacgcatacacacacacacacacatatactcatACATTCACTTTTGGAGCGTAAACGAGGTTCACCCCTGCCCGCTTTAGGGCCACACATTTAACACGCATGTGAAGAGAAGAAGTCTCACCCTGCGCTCACACTTACTCTGCTGTCCAGAGAGAAAACAGGGTGGTGTCTGGGGTCAGTCTGCTTAAGGGGAGCGGAAACTTCCACAGCAGGGTGCTACTAAAACTGCCTCAGTCCACCTTATTGAAACCTGTCCTCACCAGTCCTCAAACTCGCATATGTTTTTAATCTCACCTCATTTGCCCTCACCTTCCTGTCCCCCTCAATCTGTCCAGTTCTTACATGTCCCGCTTGAATCCTTACTTGGCCCTTCAAAGTGGAGGTTGGTGTGGGGTCGGACTTCttctctgtgtgagtgtctgtgggTGATGTGATCAGCAAAGCAGAATCGTATTCAACTGCAAACCAGCATCTATTGGTTAAAAAGTTGTTACTTGTAATATTGATGATTGCTATTACTGTCGATatggtgtctttttttttctttttctttttttttttttttttacaatgcatacATGAATTGTTCTTTAGGGAAAAAAAGGATTAATCCGCAGAGATTTTTTGAattcgttttatttttcctttttcatattGTAGTGAAAGCCGATCCTGCTCCTCCTGTTATAACTTCAGGCAGCCACAGGGGGGCGCTCTAAACCAGCCTCTCATTCAACCTCACTGTTCGACTAACATCCTGCTCTCCCTTcctttcttcatctctctctttttctgtctctcgtTTCCACTCTTCCAATTCCAGTTTTGTCAAATTAAAGATCGGCATTAGAGTCACAGAGTGTagcaaaaaatattcttttacgTTTAATACTCTAGTACTGAGTCTTTCACTTCGTTTGGGTAGAACTTTGCTCCTTCCCTCTATTCGTGATACACAATGTAACCTCATGTTtgtgcttcttttatttttcttattcgGAAATTTAAATAAGCTGATCTTTGTATTTTCCAAATTTCTCATATTCTGGTGGTAATAAATAGATGTTACACAAATGGACTCAGTGTTATTTATAAACGCTCTCAAATTCATCATGGTTTAGTCATATGATCTAGAGtatcttttaaatgttgaaataagtAGTTATAATCCTGACAGTTAAAGaaatacatgcaaatgtattatatgtatactATTcctatatttgtaatatatatatcaatccgATATGTACATTCAAGaccagttttatttatttattttattattttggaaaatCTGAATATGCTAATGCATTATTGATAAGGAACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53376 lncRNA downstream 15163 13562654 ~ 13563898 (-) True G36218
TU53385 lncRNA downstream 131942 13446621 ~ 13447119 (-) True G36227
TU53365 lncRNA downstream 140957 13380299 ~ 13438104 (-) True G36213
TU53391 lncRNA downstream 160099 13414876 ~ 13418962 (-) True G36229
TU53392 lncRNA downstream 164674 13412644 ~ 13414387 (-) True G36230
XR_006250978.1 lncRNA upstream 36785 13619026 ~ 13643314 (-) True LOC122345175
TU53448 lncRNA upstream 51429 13633670 ~ 13637323 (-) True G36279
TU53457 lncRNA upstream 60285 13642526 ~ 13643325 (-) False LOC122345175
TU53382 lncRNA upstream 125859 13708100 ~ 13711959 (-) True G36224
TU53473 lncRNA upstream 130439 13712680 ~ 13713420 (-) True G36297
XM_043239657.1 mRNA downstream 10865 13565166 ~ 13568196 (-) True kptn
XM_043239503.1 mRNA downstream 57493 13517643 ~ 13521568 (-) True ckma
XM_043238693.1 mRNA downstream 167225 13409262 ~ 13411836 (-) True rhogc
XM_043239924.1 mRNA downstream 171114 13392656 ~ 13407947 (-) False taf1
XM_043239921.1 mRNA downstream 171114 13392656 ~ 13407947 (-) False taf1
XM_043239037.1 mRNA upstream 30420 13612661 ~ 13618357 (-) True ftr84
XM_043239038.1 mRNA upstream 64407 13646648 ~ 13653051 (-) True il13ra2
XM_043239040.1 mRNA upstream 64407 13646648 ~ 13653050 (-) False il13ra2
XM_043239039.1 mRNA upstream 64407 13646648 ~ 13653050 (-) False il13ra2
XM_043239033.1 mRNA upstream 72053 13654294 ~ 13699216 (-) True lrch2
unassigned_transcript_955 other downstream 203361 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 524204 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 1073103 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1259376 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 1409734 12165410 ~ 12169327 (-) False sh2d1aa
XR_006250976.1 other upstream 76836 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 77733 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 134883 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 235501 13817742 ~ 13818942 (-) True G36336
unassigned_transcript_956 other upstream 256649 13838890 ~ 13838962 (-) True trnam-cau_26

Expression Profile