RNA id: XM_043240104.1


Basic Information

Item Value
RNA id XM_043240104.1
length 1869
RNA type mRNA
GC content 0.46
exon number 4
gene id h3f3c
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13579061 ~ 13582290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gAGGTGCATTCTGGGAGAAAATGATTGACATCGCGGCCATTTTGGCTCTGGCCGCCCCGCTCCCATTGTGTGTGAGATAGTAAATACTGACACTGCCAGACAAGCCGAGCACATATTTCACCGCGCGAATTAAAACACGTTCACCTGAGGTGATATTGATTAACAATGGCCCGTACTAAGCAGACTGCTCGTAAGTCCACCGGAGGAAAAGCTCCTCGTAAGCAGCTGGCTACCAAAGCTGCCCGCAAGAGCGCTCCCTCAACTGGAGGAGTCAAGAAACCTCACCGCTACAGGCCCGGTACTGTGGCTTTGCGTGAGATTCGTCGGTATCAGAAGTCCACTGAGCTGCTGATCCGTAAGCTGCCATTCCAGCGCCTGGTTCGAGAGATTGCCCAGGACTTCAAAACTGATCTGCGTTTCCAGAGCGCCGCCATTGGTGCACTGCAGGAGGCCAGTGAGGCATACCTGGTTGGTCTGTTTGAAGACACTAACCTGTGTGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGCGGAGAGCGCGCTTAAACTCACCCCTTCTTTCTATTGccctctttatttctttctgtctctccacTTGTTCTCCTCCTGCTTTTCTTGGTAGAGTTTAGAGTATCAGTGATGGGGAGTAACTGTGTCTCAGTCTGCTAGTGCTGTCTAAATGACGCGTAGGGTACCTATATGTGCATGTAACAGGTGCTGTTgatcacacacgcgcacacacattcatgcacacaaacacacagacacgcatacacacacacacacacatatactcatACATTCACTTTTGGAGCGTAAACGAGGTTCACCCCTGCCCGCTTTAGGGCCACACATTTAACACGCATGTGAAGAGAAGAAGTCTCACCCTGCGCTCACACTTACTCTGCTGTCCAGAGAGAAAACAGGGTGGTGTCTGGGGTCAGTCTGCTTAAGGGGAGCGGAAACTTCCACAGCAGGGTGCTACTAAAACTGCCTCAGTCCACCTTATTGAAACCTGTCCTCACCAGTCCTCAAACTCGCATATGTTTTTAATCTCACCTCATTTGCCCTCACCTTCCTGTCCCCCTCAATCTGTCCAGTTCTTACATGTCCCGCTTGAATCCTTACTTGGCCCTTCAAAGTGGAGGTTGGTGTGGGGTCGGACTTCttctctgtgtgagtgtctgtgggTGATGTGATCAGCAAAGCAGAATCGTATTCAACTGCAAACCAGCATCTATTGGTTAAAAAGTTGTTACTTGTAATATTGATGATTGCTATTACTGTCGATatggtgtctttttttttctttttctttttttttttttttttacaatgcatacATGAATTGTTCTTTAGGGAAAAAAAGGATTAATCCGCAGAGATTTTTTGAattcgttttatttttcctttttcatattGTAGTGAAAGCCGATCCTGCTCCTCCTGTTATAACTTCAGGCAGCCACAGGGGGGCGCTCTAAACCAGCCTCTCATTCAACCTCACTGTTCGACTAACATCCTGCTCTCCCTTcctttcttcatctctctctttttctgtctctcgtTTCCACTCTTCCAATTCCAGTTTTGTCAAATTAAAGATCGGCATTAGAGTCACAGAGTGTagcaaaaaatattcttttacgTTTAATACTCTAGTACTGAGTCTTTCACTTCGTTTGGGTAGAACTTTGCTCCTTCCCTCTATTCGTGATACACAATGTAACCTCATGTTtgtgcttcttttatttttcttattcgGAAATTTAAATAAGCTGATCTTTGTATTTTCCAAATTTCTCATATTCTGGTGGTAATAAATAGATGTTACACAAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53376 lncRNA downstream 15422 13562654 ~ 13563898 (-) True G36218
TU53385 lncRNA downstream 132201 13446621 ~ 13447119 (-) True G36227
TU53365 lncRNA downstream 141216 13380299 ~ 13438104 (-) True G36213
XR_006250978.1 lncRNA upstream 36736 13619026 ~ 13643314 (-) True LOC122345175
TU53448 lncRNA upstream 51380 13633670 ~ 13637323 (-) True G36279
TU53457 lncRNA upstream 60236 13642526 ~ 13643325 (-) False LOC122345175
TU53382 lncRNA upstream 125810 13708100 ~ 13711959 (-) True G36224
TU53473 lncRNA upstream 130390 13712680 ~ 13713420 (-) True G36297
XM_043239657.1 mRNA downstream 11124 13565166 ~ 13568196 (-) True kptn
XM_043239503.1 mRNA downstream 57752 13517643 ~ 13521568 (-) True ckma
XM_043238693.1 mRNA downstream 167484 13409262 ~ 13411836 (-) True rhogc
XM_043239922.1 mRNA downstream 171373 13392656 ~ 13407947 (-) False taf1
XM_043239037.1 mRNA upstream 30371 13612661 ~ 13618357 (-) True ftr84
XM_043239038.1 mRNA upstream 64358 13646648 ~ 13653051 (-) True il13ra2
XM_043239040.1 mRNA upstream 64358 13646648 ~ 13653050 (-) False il13ra2
XM_043239039.1 mRNA upstream 64358 13646648 ~ 13653050 (-) False il13ra2
XM_043239033.1 mRNA upstream 72004 13654294 ~ 13699216 (-) True lrch2
unassigned_transcript_955 other downstream 203620 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 524463 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 1073362 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1259635 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 1409993 12165410 ~ 12169327 (-) False sh2d1aa
XR_006250976.1 other upstream 76787 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 77684 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 134834 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 235452 13817742 ~ 13818942 (-) True G36336
unassigned_transcript_956 other upstream 256600 13838890 ~ 13838962 (-) True trnam-cau_26

Expression Profile