RNA id: TU53391


Basic Information

Item Value
RNA id TU53391
length 3675
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G36229
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13414876 ~ 13418962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCGGTTTCTTTTATTCGTGGAAAGTTAATGCAACGCTAACacatcaaatgtaatatttttatatagaaaagtgccccagaaaataaaaataaatgtatgcaacacaaaacaatttCACAGATTAAACCTGTATTTCACAAACACAATTTGACTTTCATAAGTAAAACTCAAATTGAACCAcaaaattgaaaagaaaagtaCAATGAGCTTACTAAAGCCGCTCAATTGTTTAGTCAAACAACAGTCCCAAAAGCAACTTTTTCACAAGTAATAACACATAATTAATCAAATCTGCCTTACATGCAGATTATCCACAGGGTAATGTGTTACAAATGTACATGACAGTAAAGGTAAACATCacagattatatataaacaccacCACAcccaaaattatgtttttatatatatattttatatataaccatgaaattaatttttgtattaatctTGTTTCTTGTTTATGTTTTGGGCCAACAGCCATACAGcttcaaaagaaatattttctttggaccttgtaaacattttaatgctgcTGGTGCTTGTAATTAATTATGTACCATTCTCCTCACCAGATATATACGCAACTGCGAGTATCACCACATCTGACCAGCCACAGGCCTAAACGCAGACCTCATCCTGTGTCAGACAGGGCTGCCGGTTTCACGGAGAGCTTCTTGAGCTCAGACAGTTGTCCCCGTCCAGgtcaaagattttaaaaactgtgtCCAGAACACTATCTGAAAGGTTGCGACCTGTCGCTATCTTCACTGCCCGCTTAAACTCAGCTATGGAGGAAATAATGAGGGAGAGTGCTATGCGTTTTAGGTACTCAATACATACAATTTTGACCTGTCAAGAAATGCGCAGAGGATAATcgattatttacttttaaacattaataactaCTGGCATCCAGATTAGTCTTACCCATTCCTATTGGCCTGTTGGCATCATTAATCATTTTGACTGAGAAGGCAAAGTCCTCCAGATTGTTGGTAAAGAGACAGAATTCTTTAAATTCATCAAAGGTAATGCTCTGAAAAACATACcgttatgtatgtatatatgaatgtcGGGAAATTCAAAATGCAAGAATGGAATTACAATACTGCTACAGGaagcaattttaaataacatttcctCTACATGCCAGCAGTACAACTCTATGTGgactgtaaaaatgcttttactcAGGATTGACATTAGATTTCTACTCTAGAAATATGACTGATGCAGAACTATATAGAGCACGTTTTTCATAAACACTAGAGATCTCTGAAGAGTGGCCACTGGTTTCTCAGCTACGTACTAGTTACATTTAGAATCTATTCCTCTCAAACTAGAAGAATTGACCTAACATCAGTTTTTATCCAAGtctgtgttaaaatatattcaggacTATCAGTGTTTAAAAGATGTTACCTGTCCGGTGGGGATTCTCTTCCTCATGTTTTCCCAGTATGCCTCATTGTTCTCTTCACTGGTGTAATGAAGCAGCCATTCAGCAAAGTCCTCCCGCCTCATGGTCTTCATCCCGTTAGAAAACCGCAGGAACTCGACTTCTTGCACTTCAGCCTGCAGATCTTCCATAAACCtatacaaaaccaaaataaatccTCGAAATACAGCTCTTAAGGTTAAACAAAGCTAAAACACAGGATAGTGTTGCAGTTAGAGAGATGGTTTACTTTGAATAATCTTCACATATTCTAcagattttttaattagatGTTGCTGTATTCTGCCAATTATCACGTCTACATTTAAGCAAAACATCCTGATTAGGAAATTCTATCAATTACGCTGTTCATgaagaaaatgatttatatcagtcactaaaatattaaacacagaCAGTACTTTACCTGCAGAAATCTTTGTATTGCAGCTTATTCTTGCCATTTTTCCCAAAAAAGAACACCTGTAGTGTAGTGTTGACCTCATAAACACTGTCTGAAAGCTGTAAAGAAACAAAGCTATTCAGTACAACCGCAAAAATGTTCAATACAACAGAACTctgatattaaacaaaaacatatatatagaaataacattcaaaatctctaaataaaatgcaaagttGCTGAAGTTACACAGCATGTACCCACCTCTGTCCCATTCTGCCTTAGAAGCTCTTTCCTTCGTCTAATAATTTTCTTCAGCTACCAAAAAGAGAATGTAGTTAGGAGACTGCTGGTAAAAGTCAGATCTAAAAAAGTGATTCTTATTTACTCATGTTCTCttgtatttatgcatatgtttgcatatgttatgttatgttatgaagCTTTTTCAGCTTCAGTGAATCTTCTGGACCTTGAGCACGTGGCAAACTAATACATGTGAATAGACTCAACATTTAAATCCAActaaattctaattaaatgatgcatttttctGTTGTTCCTATCATGCACCAATCATGCATCAATCATTCCCACATACCTGTTACACATCGGTCTCATCTCATGCCAGCATTATTAGAAACACAAAGCAGACAGACCCGAATGACCACAATACTTACAATCCACAGCGTTTAAAATCCAGCCAAGAGAACTTTCTTAATTCTGCATATATCTTCATATAATTATACTCATTTACAAGTGTTTTGAAACAACATTTGCACTTTTCAGTTTGAGTGTGAAGGCAACATGGTGTCATATAATCCAATGTGAAAAGACATTCCATACCTTCTGAAACTCCTTCTTGTCCACATGCTCATTGCCATCAATATCAAGCATTTTGAAAGCAATATGAAATCCTGTTTGAGGTTCTGGAATCACAGTGCAGTTAAACTGAGTGTAGGGTTTCTGGAAAACTTTGTAAGCCCCTCAGGTAAGCAAAAGAATCCCCACcacacatacaacacaaaaaaatgtatagctacaaacaaaaaattgatgagtataaataatatgaatgacATGGTTTGGTGTATTGCAAATCAGTGTCAGTCAATATCACTAATATTACTGTGGTAAAATTTTTGATGTTCGTAGCAAGCACTTAGTACGTGCACATGCACAATATGCAGGGTATTTAATGTCAGTTTTTGACAAATGCAAatggttttaattattattttttactgttccAGTACACACCAACTTTAATCATTGATTGTATTCAAGCAGTTAAAGCGGTAAGTCGATTTTCTTCCTAATTGTCTTCTGTGAGTTCTTGGGACAAAAGAATGCGAATTGTAAGGACATACCCTGAATTCTATTCCACTTAGTGATTTAATCAAAAGTCACAAAACAAGTTGTCAAAATTCAAACTAGAAGACAGGCTCATGCTGCATGTTTAATGCTACATGCAACAAGTGAGcacaatttatttgtattattatagcatttgtattatttcacaGCAGCCAGTCAGTCATTCTTATTACACGTCAATTCAGACCAAAATGGGCAAAAAATTTTCCATGATGCTGATGAATCGGTAGTGGTGCAGCACAGTGCAGACGTATTTTGACACAGCAAAAATTTTTGGAAATGCTGGAAATGGTCACTTTGACTTTGTGTCCATTTTCGGCTACAAATGACTACAAAACTGTGTCCATCTGATTATTCTGGACTGTCACTGACAGGACACCATGTATGCAATTATTTCAAAAGGAAACACTTACTTGTAAGAATAGTGAGCAGAAACAGGTACTCTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53392 lncRNA downstream 489 13412644 ~ 13414387 (-) True G36230
TU53349 lncRNA downstream 41121 13370210 ~ 13373755 (-) True G36200
TU53204 lncRNA downstream 91654 13322931 ~ 13323222 (-) True G36108
TU53200 lncRNA downstream 97414 13317235 ~ 13317462 (-) True G36104
TU53144 lncRNA downstream 305928 13108699 ~ 13108948 (-) True G36063
TU53385 lncRNA upstream 27659 13446621 ~ 13447119 (-) True G36227
TU53376 lncRNA upstream 143692 13562654 ~ 13563898 (-) True G36218
XR_006250978.1 lncRNA upstream 200064 13619026 ~ 13643314 (-) True LOC122345175
TU53448 lncRNA upstream 214708 13633670 ~ 13637323 (-) True G36279
TU53457 lncRNA upstream 223564 13642526 ~ 13643325 (-) False LOC122345175
XM_043238693.1 mRNA downstream 3040 13409262 ~ 13411836 (-) True rhogc
XM_043239921.1 mRNA downstream 6929 13392656 ~ 13407947 (-) False taf1
XM_043239503.1 mRNA upstream 98681 13517643 ~ 13521568 (-) True ckma
XM_043239657.1 mRNA upstream 146204 13565166 ~ 13568196 (-) True kptn
XM_043240104.1 mRNA upstream 160358 13579320 ~ 13582290 (-) False h3f3c
XM_043239037.1 mRNA upstream 193699 13612661 ~ 13618357 (-) True ftr84
XM_043239038.1 mRNA upstream 227686 13646648 ~ 13653051 (-) True il13ra2
unassigned_transcript_955 other downstream 39176 13375629 ~ 13375700 (-) True trnap-agg_13
TU53125 other downstream 360019 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 908918 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 1095191 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 1245549 12165410 ~ 12169327 (-) False sh2d1aa
TU53374 other upstream 160099 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 240115 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 241012 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 298162 13717124 ~ 13718543 (-) True G36298
TU53529 other upstream 398780 13817742 ~ 13818942 (-) True G36336

Expression Profile