RNA id: TU53602


Basic Information

Item Value
RNA id TU53602
length 1158
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G36385
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13975352 ~ 13977070 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GaacttttgattttgattttcttgtttttcaaaCAGACATCAAAAATGGATTTCAGTGAAAGCTCAGCTTTATTGACTTCAGTGAAGAAACAAGttgcaaaagacaaaaaaagatagcaagaaaaaaactgcagacattttctgaagaaagaaagatggatacaggaaatattttttatttaaatgctctttttattattgtgtgtagCCATCTTTGGCAGTTTgtatatcatgttttttttcagtcgtGGAACAGGTCGAAGAAGCTGTGGTCGTCTGGCGCATCCTCAAATGCCACCCCCTCACAATAGGCCGGGGGAACAAAGACTTGTGGGTCATCGACTTCGGGTTCAACGCCGAAGAAACCTGAAGACAAGGTCCTTCTTCTCACCATAGTAGGAGCCAGAGACCGGCAAACAGCCACAGGAAGTGGTTGACAGAGAGTAGTGAGCTGAAAAGGAAATTGGACCATGAAGTTCAGGCAGCTTTCCGTGCCATACGCGGACTCTGAGTCCCTGCTCTGTGATGGAGGGGCTGCCCATGTAGATCTCAGACTCATGAGTTGCATCGGGTGGAATCTCCATCAGGTGCTTACGGAACTGAAGAGTCTCCTTCTTGCAACTCTCGTTTTTGCTGTCTATCTCATAAAGTACCCTCTTCAAAATGTATGAGCACATCCATATAAGAAGTTTTGTTCGCGTGAGCAGTGTCCTCCACAAAACGAAATTTATTCGCTTTGGAGTCATAACTATACTCTCCAGACGCAAGGTCATGACCCCCTGTTGAAAACCACTTTCATTGTTCCACTGGTCAGTGGTGGTGAATCTGAAAAGGAAATGTTAAAGGTAAAATGTCTTCACATAGCTTATAGCTTCAGAGAATGTTCAgatgcagaaatattacagtaaaaatcagtAGTATTACAGAAACGGATTCCTTACGACATGGCTGGCGATGAGACGAAGCCCAGGCGACAGCACAGAGGCACGAGAAAACCACACAGAGCAGCTTGACTGTATGCATCATTGCTCTCCAACTTTCTTCAGGTCCAGACACATCCACAATCATTCAGAGAGTgcgctttttatatataacccCTGCACCCCATATAAATGCCCCCTCCTTTCCACCTCCTGGACATCCAGCGATGGAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53531 lncRNA downstream 156018 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 261932 13712680 ~ 13713420 (-) True G36297
TU53382 lncRNA downstream 263393 13708100 ~ 13711959 (-) True G36224
TU53457 lncRNA downstream 332027 13642526 ~ 13643325 (-) False LOC122345175
XR_006250978.1 lncRNA downstream 332038 13619026 ~ 13643314 (-) True LOC122345175
TU53878 lncRNA upstream 299026 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA upstream 302604 14279674 ~ 14282516 (-) True znhit1
TU53914 lncRNA upstream 333554 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 333892 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 334698 14311768 ~ 14320994 (-) True G36537
XM_043239846.1 mRNA downstream 7525 13965155 ~ 13967827 (-) True LOC122345582
XM_043240379.1 mRNA downstream 35136 13938641 ~ 13940216 (-) True chrm1b
XM_043240423.1 mRNA downstream 127282 13845403 ~ 13848070 (-) True LOC122345901
XM_043238578.1 mRNA downstream 242869 13720781 ~ 13732483 (-) True wdr44
XM_043239033.1 mRNA downstream 276136 13654294 ~ 13699216 (-) True lrch2
XM_043239548.1 mRNA upstream 10419 13987489 ~ 14000256 (-) True arhgap35b
XM_043239554.1 mRNA upstream 23489 14000559 ~ 14002075 (-) True fxyd2
XM_043239549.1 mRNA upstream 24864 14001934 ~ 14009536 (-) False tmprss13b
XM_043239552.1 mRNA upstream 24864 14001934 ~ 14009536 (-) False tmprss13b
XM_043239551.1 mRNA upstream 24864 14001934 ~ 14009536 (-) True tmprss13b
TU53547 other downstream 127293 13846378 ~ 13848059 (-) False LOC122345901
unassigned_transcript_957 other downstream 130393 13844887 ~ 13844959 (-) True trnam-cau_27
unassigned_transcript_956 other downstream 136390 13838890 ~ 13838962 (-) True trnam-cau_26
TU53529 other downstream 156410 13817742 ~ 13818942 (-) True G36336
TU53475 other downstream 256809 13717124 ~ 13718543 (-) True G36298
XR_006251003.1 other upstream 24864 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other upstream 26144 14003214 ~ 14009536 (-) False tmprss13b
XR_006250968.1 other upstream 68407 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other upstream 68407 14045477 ~ 14056705 (-) True rnf214
TU53907 other upstream 314993 14292063 ~ 14302381 (-) True LOC122345141

Expression Profile