RNA id: TU53795



Basic Information


Item Value
RNA id TU53795
length 821
lncRNA type sense_over
GC content 0.39
exon number 4
gene id G36503
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14321556 ~ 14326754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTAGACCTTGGGAGTATAAAATAGAGTTACTGAAATCCCATTAATCATAATATCATCCGTCTATAGATTGTACAcgatcaaaaacaaaatgaaaacagctgcagcttttatttttctcgTCTGTTGCATTGTTCTGGAGGTGAAAGGCTATACACTGCCTGGGAAGAGAAGATGCCTTTGTGCTGATAAAGGAGTGAATAAAATCTCTCCAAAGGCAATCCAGAAGGTTAAAATCATCCCTCCAAGTCCTTCATGTAAAAGACTGGAAATTCTTGTCACTCTTAAGAGAGGAGCAGGGCAGAAATGCCTGAATCCAGGGTCGGAAATAGCCAAGTATCTGCTGAAAGCCATTCAAGAAAAGAACAAAAGCCCGTAGTGGGAATCAACCATAGAGCCGATGTCCTGATCCATGGACCAGTAACCAAATCTTTCGAAAAATCACCTGCTTTCAGCATGCATTCAAAAATTAAGTAGTTAAATGTAAGCACAGTGCTTTAATCGGAGCCACTTCTGCTTTGAACAATTTGTAATaactgtaattattaataatcttttttaattctctctctctctgaaacgTGTTCTGTTTAGTAAAAGCAGAGCATTTCTTAGAAGCGCTTAGCTCTAGAGGAAGTCTCACGTAGCTGCTTGTGGTTTAAATGCTACAGCAAACACAGAAAGAGCTTGCATTGAATTTCCTGTCCTACTGATTACTGCGCAGAATAAATCATTGTGAGTGCAATTACAACTCTGGTGCTGTGCCTGTTTATCGATCTTGTGTAAGTCCTCCGTTTGTGTGATGAATAAAGGCGATCTCAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53675 lncRNA upstream 274062 14046777 ~ 14047494 (+) True G36420
TU53657 lncRNA upstream 314154 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 318025 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 321219 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 346797 13974532 ~ 13974759 (+) True G36332
TU53796 lncRNA downstream 1670 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 10387 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 10387 14333068 ~ 14337765 (+) True LOC122345214
TU53801 lncRNA downstream 19242 14341923 ~ 14342507 (+) True G36507
TU53804 lncRNA downstream 20483 14343164 ~ 14343769 (+) True G36509
XM_043238980.1 mRNA upstream 633 14315699 ~ 14320923 (+) True LOC122345144
XM_043238979.1 mRNA upstream 6955 14311644 ~ 14314601 (+) True LOC122345143
XM_043238981.1 mRNA upstream 11480 14306837 ~ 14310076 (+) True LOC122345145
XM_043238978.1 mRNA upstream 16252 14302744 ~ 14305304 (+) False LOC122345142
XM_043238976.1 mRNA upstream 16252 14302822 ~ 14305304 (+) False LOC122345142
XM_043238535.1 mRNA downstream 1662 14324343 ~ 14326767 (+) True LOC122344908
XM_043239124.1 mRNA downstream 10342 14333023 ~ 14334228 (+) False LOC122345214
XM_043240110.1 mRNA downstream 24881 14347562 ~ 14349991 (+) True mrpl1
XM_043238214.1 mRNA downstream 62986 14385667 ~ 14455284 (+) True fras1
XM_043239706.1 mRNA downstream 132736 14455417 ~ 14458914 (+) True LOC122345512
XR_006250972.1 other upstream 16252 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 16252 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 29056 14290420 ~ 14292500 (+) True G36495
TU53623 other upstream 335850 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1514340 12803952 ~ 12807216 (+) False LOC122346073
TU54000 other downstream 324808 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 395851 14718532 ~ 14720487 (+) True G36640
TU54916 other downstream 2161321 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 2161321 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 2163939 16486620 ~ 16561741 (+) True G37228

Expression Profile