RNA id: TU53857


Basic Information

Item Value
RNA id TU53857
length 1519
lncRNA type sense_over
GC content 0.43
exon number 5
gene id znhit1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14279674 ~ 14282620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCGGAGAAGAAAACAGCCGTCCGCTCGCAGGATCCCAGCCAGCGGCGCGTGCTGGATAGCGCGACGCGCCAGCGCCGTTTAACCCGCCAGCTCGAGGCTCTCGAGAAAGACAACTTCCAGGACGACCCTCACGCGAGCCTCCCGCAGCTCGTCAAGCGTCTGCCGCAGTTCGACGAGAGCAACGAATCCGGCAAGCGGAGGAAGAAGACAAGGGGCGATCATTTTAAACAGAGGTTCCGCAAAAACTTCCAGACTCTCCTGGAAGAGGAGGACCTGAGTGTTAGCGAGGGCCCAAACTATCTGACTGCATGTGCTGAGCCCTCTAAGTTCCCTCAGCGACATTTCTGTGCAGTGTGCGGCTTCCCTTCAAACTACACCTGTGTGTCGTGTGGAGCTCGCTACTGCTGTGTCCGATGTTTAGGAACACACCACGAGACCAGGTGTCTAAAGTGGACGGTATAATTTGTTTCTCCAAGCTTATCTCCTATCACAAGCTCGTGTCAAACTGCAGTTCAAGTTCCTCAGAGTCATTTGCCTGCACAAACATGTTGAGGTATAAATCACTGGAAGGCTTAGACCCGGATGCTAAAATAATCTGTCATCTCTGCACCTCTTTCTACAACAAACAGGCTGCACTTCAGTCAAATTTGACACAAGGTTAAGCGTATAAAGCGTTTGCCAAAAAGTGAGGAGCTGTTGTCCTTACAAAAgttaaaacattcattcaggcatttctttatcaaaatgaaattaaatgaacctGCAGCAGCTACAATGGTTTTTGTATATGAAGTTTTGTAATTTAACACGcagtattgtttttgtatgtaaatatgtataaataattgtttctCTCACTGATATAACATTTTGTTGtctcaaacaaataaatgactagaaatggtaaaaatgtgcttgttttatgatttgtttttcaagAAGAGAGGTATTTTTAAGACTTTGCACTTTAAAATTCTAATGATGAATTTTAAGGTAAAAGCATCAATATACAcgtgtaatatattaaaataattattttcaggaAATTATATTCTCATACTTCTTAAAAATACTCTTTATACATCTTTTCATTATGAGCACTAACGTTTTAAATTCCCATCACGGATAAAGGTgataaatctttctttttttggacgGCTCAAGTTCTTTGTGTTCGTTAATAGCACATATACAGCTCCTCAGGAAGAGAGCGTCGTTCTGATTCAGACATTCACTTGGTGCATTGAGCGTATTTTTGGAGAACCGAAAAAGCTAACCCGTTCACATGGAAAACCGTACAGAAATAAGTATTTCTGTCCCACGTCGTAATTCCGGCAGTTGTTTCAATGACTTTGTGCTTTCCAGCATTTCTATATGAAGCGCAGCTCGTGTGTGTCGGCCAGTCCGCAGCTGGTTTTGTGTTCGTGGAAAAGTTCAGACAGAGACTTCATGTATAACCCGTGGTAATGATCCACCTGTTCCTGCGACGGGCTGTCCACCTGAGGCACGGTAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53602 lncRNA downstream 302604 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 302604 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 302604 13975352 ~ 13977070 (-) False G36385
TU53531 lncRNA downstream 460340 13818248 ~ 13819334 (-) True G36337
TU53473 lncRNA downstream 566254 13712680 ~ 13713420 (-) True G36297
TU53914 lncRNA upstream 28108 14310624 ~ 14310860 (-) True G36561
TU53915 lncRNA upstream 28446 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 29252 14311768 ~ 14320994 (-) True G36537
TU53923 lncRNA upstream 66592 14349108 ~ 14349936 (-) True G36567
XR_006250925.1 lncRNA upstream 181788 14464304 ~ 14467777 (-) True LOC122344807
XM_043238372.1 mRNA downstream 5537 14240339 ~ 14274137 (-) True LOC122344799
XM_043238378.1 mRNA downstream 41328 14225990 ~ 14238346 (-) True atp1b2b
XM_043238279.1 mRNA downstream 59594 14212659 ~ 14220080 (-) True chrne
XM_043239938.1 mRNA downstream 67357 14191695 ~ 14212317 (-) True pld2
XM_043240382.1 mRNA downstream 89202 14156523 ~ 14190472 (-) True mink1
XM_043238974.1 mRNA upstream 11233 14293749 ~ 14299976 (-) False LOC122345141
XM_043238973.1 mRNA upstream 11233 14293749 ~ 14299801 (-) False LOC122345141
XM_043239122.1 mRNA upstream 51702 14334218 ~ 14346680 (-) False cnot6l
XM_043239121.1 mRNA upstream 51702 14334218 ~ 14346678 (-) True cnot6l
XM_043238385.1 mRNA upstream 211073 14493589 ~ 14500572 (-) True paqr3a
XR_006250968.1 other downstream 222969 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 222969 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 270138 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 270138 14003214 ~ 14009536 (-) False tmprss13b
TU53547 other downstream 431615 13846378 ~ 13848059 (-) False LOC122345901
TU53907 other upstream 9547 14292063 ~ 14302381 (-) True LOC122345141
XR_006251010.1 other upstream 923435 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 1013502 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1067500 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1290595 15573111 ~ 15574817 (-) False alkbh2

Expression Profile