RNA id: TU53914


Basic Information

Item Value
RNA id TU53914
length 237
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G36561
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14310624 ~ 14310860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgctgagtAACTTtatcaaaacacaacaaaccCGAATCAAATTTGAGGCATTCTGGCAAAATATTAGCAGTAGTTTTCTATCCAACAGAAACATATAGTCAACCATAACAGACTGACAAAATTCTAATTATGAATGACTTTACAAAAACCACATTACTTTGTCGTGTTTCACTTCTGCATATTATACACAatatgaaaaccttttttttgtttttgttaagttGAGCTGAGTTGAAT

Function

GO:

id name namespace
GO:0042612 MHC class I protein complex cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53878 lncRNA downstream 557 14276096 ~ 14310067 (-) True G36541
TU53857 lncRNA downstream 28108 14279674 ~ 14282516 (-) True znhit1
TU53602 lncRNA downstream 333554 13975352 ~ 13977070 (-) False G36385
TU53605 lncRNA downstream 333554 13975352 ~ 13977070 (-) True G36385
TU53610 lncRNA downstream 333554 13975352 ~ 13977070 (-) False G36385
TU53915 lncRNA upstream 102 14310962 ~ 14311328 (-) True G36562
TU53864 lncRNA upstream 908 14311768 ~ 14320994 (-) True G36537
TU53923 lncRNA upstream 38248 14349108 ~ 14349936 (-) True G36567
XR_006250925.1 lncRNA upstream 153444 14464304 ~ 14467777 (-) True LOC122344807
XR_006250924.1 lncRNA upstream 153444 14464304 ~ 14466325 (-) False LOC122344807
XM_043238974.1 mRNA downstream 10648 14293749 ~ 14299976 (-) False LOC122345141
XM_043238973.1 mRNA downstream 10823 14293749 ~ 14299801 (-) False LOC122345141
XM_043238380.1 mRNA downstream 28004 14280281 ~ 14282620 (-) False znhit1
XM_043238379.1 mRNA downstream 28004 14280281 ~ 14282620 (-) False znhit1
XM_043238372.1 mRNA downstream 36487 14240339 ~ 14274137 (-) True LOC122344799
XM_043239122.1 mRNA upstream 23358 14334218 ~ 14346680 (-) False cnot6l
XM_043239121.1 mRNA upstream 23358 14334218 ~ 14346678 (-) True cnot6l
XM_043238385.1 mRNA upstream 182729 14493589 ~ 14500572 (-) True paqr3a
XM_043239516.1 mRNA upstream 262695 14573555 ~ 14616878 (-) True antxr2a
XM_043238705.1 mRNA upstream 395517 14706377 ~ 14717330 (-) True prkg2
TU53907 other downstream 8243 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 253919 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 253919 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 301088 14001934 ~ 14009536 (-) False tmprss13b
XR_006251004.1 other downstream 301088 14003214 ~ 14009536 (-) False tmprss13b
XR_006251010.1 other upstream 895091 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 985158 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 1039156 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1262251 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 1262398 15573258 ~ 15574817 (-) False alkbh2

Expression Profile