Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00010173 |
| length | 726 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 5 |
| gene id | XLOC_005297 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 18410608 ~ 18414539 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043461 | proton-transporting ATP synthase complex assembly | biological_process |
| id | description |
|---|---|
| ko03029 | Mitochondrial biogenesis |
| id | description |
|---|---|
| ZDB-GENE-050411-18 | Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton-transporting ATP synthase complex assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency, nuclear type 1. Orthologous to human ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2). |
| ensembl_id | ENSDART00000132956 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00011117 | lncRNA | downstream | 183854 | 18224534 ~ 18227730 (-) | True | XLOC_005295 |
| TCONS_00011116 | lncRNA | downstream | 684044 | 17721801 ~ 17727540 (-) | True | XLOC_005291 |
| TCONS_00010158 | lncRNA | downstream | 713272 | 17697132 ~ 17698312 (-) | True | XLOC_005287 |
| TCONS_00011114 | lncRNA | downstream | 1444776 | 16964656 ~ 16966808 (-) | False | XLOC_005273 |
| TCONS_00011119 | lncRNA | upstream | 38671 | 18453207 ~ 18454407 (-) | True | XLOC_005298 |
| TCONS_00010204 | lncRNA | upstream | 863854 | 19278390 ~ 19282009 (-) | True | XLOC_005315 |
| TCONS_00011120 | lncRNA | upstream | 1642435 | 20056971 ~ 20065827 (-) | False | XLOC_005318 |
| TCONS_00011121 | lncRNA | upstream | 1900459 | 20314995 ~ 20334709 (-) | True | XLOC_005321 |
| TCONS_00010219 | lncRNA | upstream | 1992050 | 20406586 ~ 20409746 (-) | True | XLOC_005326 |
| TCONS_00010167 | mRNA | downstream | 2996 | 18381982 ~ 18408588 (-) | False | XLOC_005296 |
| TCONS_00010169 | mRNA | downstream | 3018 | 18382288 ~ 18408566 (-) | True | XLOC_005296 |
| TCONS_00010168 | mRNA | downstream | 18176 | 18381985 ~ 18393408 (-) | False | XLOC_005296 |
| TCONS_00010166 | mRNA | downstream | 514450 | 17889465 ~ 17897134 (-) | True | XLOC_005294 |
| TCONS_00010165 | mRNA | downstream | 548117 | 17815725 ~ 17863467 (-) | True | XLOC_005293 |
| TCONS_00010175 | mRNA | upstream | 53530 | 18468066 ~ 18519822 (-) | False | XLOC_005299 |
| TCONS_00010176 | mRNA | upstream | 54033 | 18468569 ~ 18483348 (-) | True | XLOC_005299 |
| TCONS_00010177 | mRNA | upstream | 137061 | 18551597 ~ 18560500 (-) | True | XLOC_005300 |
| TCONS_00010178 | mRNA | upstream | 151017 | 18565553 ~ 18568834 (-) | True | XLOC_005301 |
| TCONS_00010179 | mRNA | upstream | 156919 | 18571455 ~ 18578432 (-) | False | XLOC_005302 |
| TCONS_00010161 | other | downstream | 704683 | 17706792 ~ 17706901 (-) | True | XLOC_005289 |
| TCONS_00010135 | other | downstream | 1413142 | 16997206 ~ 16998442 (-) | True | XLOC_005275 |
| TCONS_00010131 | other | downstream | 1509825 | 16901645 ~ 16901759 (-) | True | XLOC_005269 |
| TCONS_00010127 | other | downstream | 1665037 | 16743282 ~ 16746547 (-) | True | XLOC_005265 |
| TCONS_00010126 | other | downstream | 1665268 | 16743052 ~ 16746316 (-) | False | XLOC_005265 |
| TCONS_00010183 | other | upstream | 323877 | 18738413 ~ 18738529 (-) | True | XLOC_005303 |
| TCONS_00010211 | other | upstream | 1774633 | 20189169 ~ 20189286 (-) | True | XLOC_005319 |
| TCONS_00010220 | other | upstream | 2161104 | 20575640 ~ 20584439 (-) | False | XLOC_005327 |
| TCONS_00010232 | other | upstream | 3155247 | 21569783 ~ 21569899 (-) | True | XLOC_005332 |
| TCONS_00010235 | other | upstream | 3258413 | 21672949 ~ 21680620 (-) | False | XLOC_005333 |
