RNA id: TU53922


Basic Information

Item Value
RNA id TU53922
length 206
lncRNA type sense_over
GC content 0.39
exon number 2
gene id mrpl1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14347562 ~ 14349991 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATACTATCCCAAACCTGTACACGAGGTGTCTGTGGCCATTGAAATGATGAAGAACTTTCAGAAGTTGGATTTCAGTTCTGAAAACCAGCCTGTGTATACGTCAACTTGCGTCTAGACATGAAGCTGGAGAAAAAGaaaaaagTGGATCCATTTGTTAGCACTATTAATTTACCACATCCCTTCAAGTTGGACATCAACAAAATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53805 lncRNA upstream 1410 14345884 ~ 14346835 (+) True G36510
TU53804 lncRNA upstream 4476 14343164 ~ 14343769 (+) True G36509
TU53801 lncRNA upstream 5738 14341923 ~ 14342507 (+) True G36507
TU53790 lncRNA upstream 10480 14333068 ~ 14337765 (+) True LOC122345214
TU53787 lncRNA upstream 13062 14333068 ~ 14335183 (+) False LOC122345214
TU53936 lncRNA downstream 117110 14465899 ~ 14466241 (+) True G36573
TU53931 lncRNA downstream 144759 14493548 ~ 14528933 (+) True G36570
TU54016 lncRNA downstream 378440 14727229 ~ 14727743 (+) True G36644
TU54029 lncRNA downstream 429172 14777961 ~ 14778375 (+) True G36653
TU54024 lncRNA downstream 463684 14812473 ~ 14815463 (+) True G36651
XM_043239124.1 mRNA upstream 14017 14333023 ~ 14334228 (+) False LOC122345214
XM_043238535.1 mRNA upstream 21478 14324343 ~ 14326767 (+) True LOC122344908
XM_043240101.1 mRNA upstream 25548 14321528 ~ 14322697 (+) True cxcl11.8
XM_043240102.1 mRNA upstream 25548 14321532 ~ 14322697 (+) False cxcl11.8
XM_043238980.1 mRNA upstream 27322 14315699 ~ 14320923 (+) True LOC122345144
XM_043238214.1 mRNA downstream 36878 14385667 ~ 14455284 (+) True fras1
XM_043239706.1 mRNA downstream 106628 14455417 ~ 14458914 (+) True LOC122345512
XM_043239705.1 mRNA downstream 110665 14459454 ~ 14463721 (+) True LOC122345511
XM_043238383.1 mRNA downstream 117719 14466508 ~ 14493471 (+) False bmp2k
XM_043238382.1 mRNA downstream 117720 14466509 ~ 14493471 (+) True bmp2k
XR_006250972.1 other upstream 42941 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 42941 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 55745 14290420 ~ 14292500 (+) True G36495
TU53623 other upstream 362539 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1541029 12803952 ~ 12807216 (+) False LOC122346073
TU54000 other downstream 298700 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 369743 14718532 ~ 14720487 (+) True G36640
TU54916 other downstream 2135213 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 2135213 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 2137831 16486620 ~ 16561741 (+) True G37228