RNA id: TU53966


Basic Information

Item Value
RNA id TU53966
length 2790
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G36602
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14485814 ~ 14488728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttatttataattagcATTGTATAAAGAAACATTCAGTTATACATTATGATACATGAGTATTTACATCGGTTTGTCAATTGGAGACTGAACATTAACAGCTTATGCAACTGATgctgtatgtatgcatgtatgtacagATGAGAAGTCACTGAGGAATGGAGGAGCTATGAACCTCTGTCATCTATAAGAACAtatgcaaaataacaaacagtGTGTGTTACACAGCTAGGCTCCTGTACCATGATCTCTCAGGCAACATAAGGCTTGAAATGAAAGCTGTTGGAGGATAAACTGTCACCTGTGCACTTTTAGTATTAGCgtcaacaaaattaaaaagaaagaccaaaaacaaatgtaacCAATAACTCCAATGTATAAGCAAGTGGGTTTAGTCAGTCGTCTTCAACAACTGTTCTGCTTACACTTAGTTCACAATATGGCTCTAAAGGCTTTTAATACAAGTTGTGTTTACAAGTCTGTCAGTTTTAACTGTCCACCAATATCCCACTCAGTCAAGATGTCTCTGAAAATGGCTGTCTTTATCTAATACAGAACGGCTACGAACACAttcaactttaaaaagaaaacacataaaaaaatttaccAAACATGTTCTGATAAAGCAAAGTAACTTGAGTGGGTGATGAGATGATGGCGTATATAAAATTAGGAATCCAGAACACGGATTCGCTAAATATCAACTTACCGTTgcgaaaaaataaaagttcggTAAACATTATGGTAAGCCCTTCATGTAAACTATTACTAAATGCACTGAGCGTGTACCTCTAAATGCATGCGCCGACAATGAATCCGTTAATTAAGGCTCAATGCTGCCATTATGAATGAGACGGCAACAAATGAAGTGACGTTATCTGTGGCGTGACAACCAGTGTTAACATGTAAAAAGGCTCATACATTCTTAGACATAGCGTTTTCTATGGAAAACATCATCTGTGACCAGAAAAGAGTTCTAGCATAGgctacataataataaaacaaattatgcaaaagaaagaaaaaaagggctGCCAACTCTTAGTTGCTTCTGTAGATGCAACAGTTTCTGATTATTCGGCTAACCTCACTCCAAGTTAACCTGCCAATGTTCCCTAAATTGGCAACTTAAAGTATCTTCACAGTAAATTACAGAAAGGAAAAACAAGTCTCAATGAGGAATTTAAAGCCAACTCTTAACACTGGAGGAGAGAGACTTGTGTTCAACTCCATGAAAAATTGGCATGTTTACAAGTAAACAAAGTGAATATGAGGATCGCTGTGAATTTTTCTATGGTTTGAGGTCCATAGAAATTGTACCTGAGAACTTCTGGCACTCACTGTTTCTATCAACAACTTGCTATCAAGCACAAAATGTAGCTCtgaagtacagaaaaaaaaggaaatccaGTTAAGTGGAAAGTTAGGTTGATCAAGAATATGAAAATCTATTCTATCATGCCAACCTGATgcctttgacaaaaaaataaaaaaataattaaatgccaaaataaaagaaaaaaagaaagacatttccCTTAAACttgtgcattttcttttctaacTAAAGGAAAAACTCATTTTCTGCTCTGCATAATacaaacatgtttgaaaaaaaaaaaaaaaaaaaaatagaatgttagtcctgagcaaaaaaaagaaagaaaaaaaaggataaatatatataaacggACAAAAAGTCCAGAGTACAGTTCACTTACTGCACCACCATATAGGAGTTACCtcaaactatttaattaaaaataaacttcttaaaatgttgtttaaaatgcagatgTGAAAAGAGCATAGCACAAACTTACTACTGCAcgtaaagacaaaaacaaaaattaaagcttgaaaaacagcaaataataacagtaggaaaaaaaaactcaaggcACCAGCAATAAGTTGTAAATAAGAAGGTGCTGTAAAGCTGTTGTTTTgtgaagtataaaaaaataaaaataaaacattaaaagtctATTCCTTATCGCTTATAGTTCTAAAtgatacatatacattttaaatctgcacattttctatttctatGCTTGCATTTTACTATTTCCAGCTTTTTGGGGAGgggatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatataacatCTAATCCTATGCATGTACCAGGCatatagtattttattaaatttttctcTCATCTACACCTTATGAAcagagaaatgaaaacaaaaaaaagaggcttTCTAAGATATACAGGGTTAGTTTAAATAATGACAAGACTGTAACTgtctaaatatatgcatttaaagtggATTAAGAATAAAAAGGAACATTGATTTTGTTTGTCTCCGGACTCCAGATGTGACAGTAATATGTGGTGTAGAGCGGCCACATCCAGCgagcagagagacagaaagggGTCGGGAAGAGCAGGAATAGGGGAACACAGATatgaggagagaggaggagcaCGGTAAACAGGGAACTTTGGTGAGGATCCTTTTGAGAGCCGGCTGCTAGAACTTGCCTGCGTTGGCCAGGAAGGGCACAGAGCCAAATGGATCCTCAGGGAGTGAGGGCTGCAGTACCGGCTGCTGTCTGTCTATGCTGCTGGCCTCCATGCTGACAGATCGCTCTACCGGCTTTTGCTCTTAGAAGGTCGAACTCTCGATCAAGAAGCTCCTCTTCTGTAAGTTTAGAGAAATTGTCTTCTCCAAATGGGTTCCAACCGGACATATCAGGGGGGCTACTGACAGTCTGAGGAGGAGGGCTCATGACATCCACAGTGGACACTGGG

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0071345 cellular response to cytokine stimulus biological_process
GO:0034097 response to cytokine biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250925.1 lncRNA downstream 18037 14464304 ~ 14467777 (-) True LOC122344807
XR_006250924.1 lncRNA downstream 19489 14464304 ~ 14466325 (-) False LOC122344807
TU53923 lncRNA downstream 135878 14349108 ~ 14349936 (-) True G36567
TU53864 lncRNA downstream 164820 14311768 ~ 14320994 (-) True G36537
TU53915 lncRNA downstream 174486 14310962 ~ 14311328 (-) True G36562
TU54002 lncRNA upstream 163367 14652095 ~ 14652393 (-) True G36631
TU54076 lncRNA upstream 210008 14698736 ~ 14698953 (-) True G36696
TU54099 lncRNA upstream 392137 14880865 ~ 14881065 (-) True G36708
TU54112 lncRNA upstream 416657 14905385 ~ 14905621 (-) True G36714
TU54241 lncRNA upstream 680319 15169047 ~ 15169358 (-) True G36811
XM_043239122.1 mRNA downstream 139134 14334218 ~ 14346680 (-) False cnot6l
XM_043239121.1 mRNA downstream 139136 14334218 ~ 14346678 (-) True cnot6l
XM_043238974.1 mRNA downstream 185838 14293749 ~ 14299976 (-) False LOC122345141
XM_043238973.1 mRNA downstream 186013 14293749 ~ 14299801 (-) False LOC122345141
XM_043238380.1 mRNA downstream 203194 14280281 ~ 14282620 (-) False znhit1
XM_043238385.1 mRNA upstream 4861 14493589 ~ 14500572 (-) True paqr3a
XM_043239516.1 mRNA upstream 84827 14573555 ~ 14616878 (-) True antxr2a
XM_043238705.1 mRNA upstream 217649 14706377 ~ 14717330 (-) True prkg2
XM_043238706.1 mRNA upstream 229796 14718524 ~ 14778259 (-) True rasgef1ba
XM_043238707.1 mRNA upstream 229796 14718524 ~ 14737308 (-) False rasgef1ba
TU53907 other downstream 183433 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 429109 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 429109 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 476278 14001934 ~ 14009536 (-) False tmprss13b
XR_006251010.1 other upstream 717223 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 807290 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 861288 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 1084383 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 1084530 15573258 ~ 15574817 (-) False alkbh2

Expression Profile