RNA id: TU54472



Basic Information


Item Value
RNA id TU54472
length 357
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G36967
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15561722 ~ 15562078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATAGAAGCCAAGTGCTCTCAATAAGAAGGGCACATCAGTTAGAGGTATGCGTGTGGATACAAGCCGTGTTTCCATGGTATCAAGGTCCTGATTTTGTAGTTGACAGTAGTAAAAATATTCCTCCATTTCCTAAAGGACAAATCATAAGATTTACTCTCTATTGGTTGGGCCTGGTAACATGTCGAAGGTGCATTatgaaatgattaattattaggATGAAATTAGGTAAATGCTGAAAAACTGCtaagaaaaaaattgagaaGAAAAAATTGAGAAAGCATTAGAACAGAGATCGCAAACCCTGAAGAGCTGTCCATCTCTCCCTCCATCCAGAAGATTGTAGAAGGGCAGCATGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 392364 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 656101 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 680657 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 862769 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 909329 14652095 ~ 14652393 (-) True G36631
TU54473 lncRNA upstream 70 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 2020 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 141674 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 151597 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 167125 15729203 ~ 15729893 (-) True G37067
XM_043238805.1 mRNA downstream 7036 15534694 ~ 15554686 (-) False atxn2
XM_043238802.1 mRNA downstream 7036 15534694 ~ 15554686 (-) False atxn2
XM_043238801.1 mRNA downstream 7036 15534694 ~ 15554686 (-) False atxn2
XM_043238799.1 mRNA downstream 7036 15534694 ~ 15554686 (-) False atxn2
XM_043238803.1 mRNA downstream 7036 15534694 ~ 15554686 (-) False atxn2
XM_043239934.1 mRNA upstream 5941 15568019 ~ 15578967 (-) False alkbh2
XM_043239936.1 mRNA upstream 5941 15568019 ~ 15578967 (-) False alkbh2
XM_043239935.1 mRNA upstream 5941 15568019 ~ 15578967 (-) True alkbh2
XM_043240049.1 mRNA upstream 27806 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043238711.1 mRNA upstream 43359 15605437 ~ 15611094 (-) False LOC122345011
XR_006251075.1 other downstream 194309 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 253282 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 296777 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 1259341 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 1505017 14045477 ~ 14056705 (-) False rnf214
TU54482 other upstream 11033 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 11180 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 141674 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 162949 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 164704 15726782 ~ 15727910 (-) False emc6

Expression Profile