RNA id: XM_043239936.1


Basic Information

Item Value
RNA id XM_043239936.1
length 6838
RNA type mRNA
GC content 0.38
exon number 15
gene id alkbh2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15568019 ~ 15578967 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGCATTCATAACGCAAACTAAAGCTGCTCTTCTGAAACATGCCACGTTTGAACAGTAACTTTATCTCCTGGTTTTTAGGACTGCTTATTTTCGATGTTCAATTTATACATGGTTTAAATGAATGTCGGGGAGATCAAATCACCAATGTCAGTTTACCTACTGAGCTTCAGTCTGACGTCCTGCTGCCTTGTTTCTTTGAATCAGAATTCTTGAATTCAAACCAGACAAATGAAACTTGTGTGGTATGGACTCACCTCAATTCAACAATCAAAGATATTGTGGAGCTGGGTCTGGATGGTGAGGCTCAGTTCTGGAATAACCGACGTGGACGGATTAAGACGTTCCCAAAATTACCAGAAACTGAATTGCCGGACTTTTCCATTCAGATCCGTAATGTGCAGCAGTCTGATTTAGGCGTCTACCACTGCAAACTGTTCAGAGAGACCGGCTGTCTCCTAGCCTATAAGAGGATTGAACTACACAACGAAGCAGTGGATTCTCTGACTTGGCTGATCCCAACTGGAGCAGCAGGAGGAGCAGCGCTGCTAGTAATGCTGCTTGTCCTTCTTCTTGTTGCATGCAAATTCTTCAAACGTCAGAAAAGTAACCTCTGTGAACCTGTCTATGAGAACACTTCCCAAACAAAGTTTACTAACAGAGCAAAGTTCGTTAATGAACAGGgAATGTCACTCCCCAATCCAATCTATAGTTAAAATTCACAATGTGGAACATCAGTGTGGaattcattatacattacataatcAAGAGAACTGAGAATGATTGGGATAGATGAGATTTATGTCTGGGTTTTACatatacaaatgttaaaaattaaacccaaacacatttaaaacttcaaacttagttaacattattatttctgaTGGAGGGGTGATGTATCTTTATCTGAAATGCCACTAGAGGGCAGTGAGACTTTTTTGGAATTCACAGCTGAAggcaaacacaaatatatacctCCCTAGCTCAAGTGCTCTTTAATCATCTCCATTAGAACTGTGGTTCTTCCATTatttaacattgtaaaaaaaatatataaaaatctaataatttaatgttaataaagaGCGGATTTGCTGAATGAATTCCACCTCAGTTTTTGCCTCATTTTCCCCCACTGATTGCACAGAAACTATTGGGTGAGTACCGAACAAAGCTGGACGGCAAAAAAACAACGATGAACTGACTTTAACTGAAAAATTAACTGTTTCCTATTGTCCTCTTTTTAAAGCTGCTCGAATAGCTCGCTAACTGAAAATATTGAAGTTATTTCAAAAAGCCACCTTAATACCAAATTGTGTGTGATAGCAGCACCGATCGTAAagttcatacaaacacacacacctgagcaaAGTAACTGTTCTGGTCACTCACCAAGTATGTAGAGCTAGCAGGAAATGGCGGCAGAAGACACTTGTCCACCAGCCTCTTTAACCTTCACAAAGGCTTGCAGCATGatgggtttttaaaaaaacaaaacaaaaaaaacaacactttctGTGTTCTGCATGTTCCATTAATGGTacggtttattttaatattttgttatgtatatGGTTTTAATCAGCCATTTTGAGTTACCTCTAACTTTCATGTTGCAAGCAACAGAACAATGCGTTGTGGTTTCCATTAGCAGTCATTACTAATTAAATATAGAATCCTGACATTATATTCCCCGTCTGAGCAGCATATCATCATTTAAAGTTTGCTTATAAGAGTTGTAAAACAGCAGGAAGCTCAGCAAACGTGCAACCTATGATCAACCTATGAAGTGCAGACGGAAACTTGTGAATTTCGTGTGTACTGTTGTGGTTTCTCAGGTTTGAGCAGAGAGATGCTCTCTTGATTCTTTGAAATGACTCTTTTCAAACCAGCAGAGATGTCACACCAGGGCCGCTGTGCCTAATTTTAGAGAACAGTGTAAAAGCAGTGGATTACGGGCCTGTATCACTGTGAACTTTTGAAGACTTTAACTATAGCATTAACCATCAGGACACTGGAATGCACACGTGAATCAAAAAGATCGTAGGAAACAGTGATGTCTTTCTGGCTCTTCGTAGCAGGAGGAGCAACTATAATTCTTTTACTTCTTGTTATCACGGTGTGTTGCATTGTTCATAAACGGAATAaaaCATTAGATCAATCATATGCAAACAGCCAGCAGGTTCGGAATGCCAGCAAAGATCAAATCATCTATGAGAATGATCAAGAGTTCAGAAAAAATATCACCAGTGGAAAAAgacaGTTTACATCTGTTTACATGAATAGGCCTGAAAATAAGGTTGCAATTTATGCCAACGGTGCACAAGAAGATGAGACATATGCAAACTGCACTGACAATGATTATGAAAATGTGGAGTAGACTGCTACGAAGACATGACTTAAGTTCATTATTCCTCATTCcctgtttttttattgtcttttttttgcacagcaCTAATTTATGTGAATTAATGATatgaataatgacatttaaaaatatcagccTTATTCAGGTGAACTGAAACTAATCTGTTATAATGGAATGATCTGTGACCATTTAGAATGATAGGTTTTTTGGTTAAAACAAATCTTTGTTGTCCTCCAGTATATTTGACTAACATTGTATTGTGAAAAAGTTACAGTGTTTCATTTACAACAGTGAATAAAATTTAGTCGGATAAGTCCTCTTTGCGCACTCTGTTGAGTAGAGATGGGTTCCCACCGTTCTGAATAGCCTCAAAATTTGATAACGGGTACGTTTTATTAACGTTTTACTATTTTTTGACTTTGAATTATTTGTCATACATCACAAAtctatattaattaataaaaattgagATTCTaacacttaatatttttattatgcagaaTATTGCGTACGTTTTAAcctaattttgttttattttcaatcaGTAAAAGGTTTTAGCAAATACTTCCTTAATTTACCGTAGCTATTGTTGATCTcacttttacagttttttccaACTGCTTACTCACAAAATCTTTACTTGTTAGACAGTTTCTGAAAGCTGAATCTTAAGCAGCAGAAGCACACACCAAATCTTCAAAACATATACGCTAAATTCTTTACATgtgcacaacaaaaaaaaaaacacaaaaaaactccTCAAATGTGCAAACACTTGCTTTACTTAAAACAAACCAATCATGGCTTTATAGTAGACCAATAAATAGGAATTTCAAGTTGGGTTTTGAACAATATATGCAAACAATGCAGACGAAGTAAGAAGAGCTGGAGAGAGAGTCAGAGCACGAGGCAGAGGAGTTCAAACAGGAGCAAGGGGAGAACGAGTCAGATGGTGAAGAGAAGAACAAAGATGAGCAACAAGAAGAGTGGGCTACTGTCATTGATCAACCACAGTTTAACAACTGGACTTAGTCTGGTATAAGTCGATTAATTTGAACTTTTAGAAATGAGAACAGATGTGTAACACAACTCTTTCAGTATAATATGGTGTAACAGAAGAGATTGACACAGCAGGTAAGTAAAAGCATTGTAGTTCATTGACAGATGTTCAGGTTAAATATAGAGATCTTGACTGGAACAAGCAAGTAAACAGTACATAGAAGGTTTAGGTGTTGAACGATCATTGAGTAATCAAGCGTTGTTCTTACAGGAACATCCGGATGAGCACACACCTCAGCTGTCTTGGACCACAGGAGATAATACAAGAGTATATTGGAGGGCTAGATGATTCCTAAGAGACATACAGAAGGTAAGTAGTAAAGAGAGTAATGTCAGAGAGTCCACTTCATTGAAACAAGACTGGATAGTGAGGGTGACTAAGGTGTGTGCTTTTGAAGTGCTCATGATTAGGTGAGGTGATTGGAACTCCGGTCATTGTGATCTCTGTGCCTGggtgtacatacatacatacatacggtataccataatacatatattacagcACCCAATGCATCCATTTACTGCAGTTCATGACATGATTGGTTACAGTCTGCTGAGTTATCATACTGTACAACAATACAGATGGTTGTTCTTCAATCTTCTGGCAATGGTTTCATGGTGGGTGAGGTTGCATGTTCACTGAAGAGCAAGAGATGGCTATATCCATCATccataaatgcatttgtgtggATGAGCTGGGCTTCAAACTCAGCAAAACCAGAAGAAGGATGAGAAACATCATTGGTCACAGGGTCATTGTCAATGTCCCTGGACAACATGGTGTAAACATTACACATCAAATCACATTTACCCAGACTTACCCATACAAACCACACTTGGCCCTTATAACAGTAACTACATCATAAGTTTTCTGGATGTTGTTAATGATATGTTTGTTCACTGCCTGCAGAATGAAGACCAGGCTAGATTGGTCATGATAGGGATAATTGGGATAATGTAAGCTTTCATTGCACACATCAGGTCCAAAACTGGTTTGTTAATAATCCCCATTTTTCTGTTGTCTACCTGCGTCCATATTTACCATTTCTAAACCCTACTGAGGACATGGTGCTGGTAAGTGTATGATTTTCATCCCTATGTCAACATGACACTACTCCATCAATGGAGGACGCATGTAGAGACACTGACTCTGCCTGCATCCAAGGTTGGATATGCCATACAAGGAGGTGCTTTTCAATCACAAATGCTTTGGTTTcatgtttggtttcattttgCTTTAGTGTTTACCTATTTGTctgcaaattacatttaatcttatacaaaaatgtacataagATCTCATGAAAGACGagctttaggttttgaataacCACGatgaatcctaaaaaaatgatattatggCAAAGGTTTGCAAAATAAGACAAATGAGCAAACAATTTACGTTTGctcatttgtgtttatatgtttcTGATATTTTGAATGCACTGCTTAATTTTGCAAGAGATATGCGTGCAATTCTTGAATTTATGTGTTAAGTTTTGAAAACATGTGtaagcagctgaaaaaaaacctgtaagTGAACCATGAATAAGTTAAGATGTCTTAAACGTAAAATGTTTGGGCTCAGCATTTACCCTCGCAGGCAGCATAATGAttgtttacttcttttttttttagacctgGCGCGTAACCACAGAAAAGTATAGTAAAGCACAGTAAAGCACGTGATGTCGCCATGGGTAGTGACGTAAACATACATTTCCGGAGGTGTGCCACCCGCGAATGCTGAAAATAAACGTTAAGCTATGTAGTGCGTTCAGGCTCAAACTAAACACAGCCGAGAGGTGTCTAATAAATGGATAAGTTTGTAACtcggcaaaaaaaaagatctgctGTTGAGGCCGATGAATTGAAAACAGAAGAACCGTTCAAGAAATACAAAGAGACGTGTGAGGTGGAAGAGTTTTCTCAGCCCATTCCCTGGCAGAAGATTGAAGCAGAGGGATTAGACTGTGACTACAGTTTGCTGTTTGACAAAGAAGAGGCTGATCAGCTTTTCAAGCTGCTGGAAGAAGAGGTGGAGTATTTTACAGGTGACAAAGCTAAACTACAAGTTTATGGAAAGTCATACAATATTCCAAGGAAGCAAGCAACATACGGCGACGAAGGACTGATGTACTCTTTCTCTGGAGTCCAACTCCTGGCTAAACCATGGACTCCCACTTTGGAACGCATTCGAGATGCTGTTACCAGGGCAACGGGCCAAACGTTCAACTTTGTTTTGATAAACAGATATAATGATGGTCATGATCACATCGGAGAGCATCGGGATGATGAACGTGAACTCGATCCTGCCTGCCCTATTGCCTCTGTATCTTTAGGCGCTGCCCGTGATTTCATTTTCCGTCATAAGGATGCGCGGACTGGTTCTAGCAAACGTAAGATTGAGCCTGTGAAGCTGGAGCTGGCTCATGGGAGTCTACTGCTCATGAACTATCCCACGAACACATACTGGTACCACAGTCTTCCAGTGagaaaaaaggtcaaaatgCCACGCATCAACCTCACATTCAGACGCATagtgaaaaacagacagaaaactgGTATAAAAATAGAGTGATTGTTCTTTTAGCATCTCATCAGGTATCGCATGTTAGTTTTTGTTTCACAACGTGTGTCAAAGCTGTTGTTAAAAGCCTGTGAGCGTTTCTCACCTCTGCAGTGAATCCTTGTTAGGTTTTAGCATATTCAGACATCTCTTGCATACTAcattcagtttttctttcttttaatgttatgatctttttgttataatttagtGTTCACGTTTTATAATTCCTTTTCCATTAAACTAGTCTTTAAAATAGTGTCTAATAAAATGTGTGCTGTGGTCAGAGAAAAATCAAGCCTCAAACCCATCTCTCAGGTTTTATATTAGGCAACAAAATGCACTTTCAAGATCATTCAAaggaaatattttcttttatttgtttgttttttttgttttgttttttagaaaacCAATAAACTACATGTGGAATAAATAGGTTAGACACAACCATACTTCTGTACAAGACATTTCTAATATAGactgggaaagaaaaaaaaaacaaaatggtcccaatgaatacattttgctaaatgtttCAAAGATTGAACTACAGAAGGCAATAGTTTGGCGAAATACTGTGGCAAAAACATAAGGGTAGCAAAAACGTGAtcgtataaatatatacattttatttttcaagcaTACGTAACAGAGTAATTTCGAGAAAGTCATACTTAGTGTTTACATTCCAGCACTGCTGGACTGAGTATGAGGTATTCGCACAGCTGTCTACCCATAACCTGCCTGTGTTACAATCTAATCAATGTCACGTTTTTCCTTGGACGACGACACATGCGGTCAGTACAGTTGCtgctaaaataaacagtaatttgTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54475 lncRNA downstream 2757 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 5656 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 5941 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 398661 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 662398 14905385 ~ 14905621 (-) True G36714
TU54502 lncRNA upstream 124785 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 134708 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 150236 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 163773 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 164747 15743714 ~ 15755392 (-) False fam222ba
XM_043238802.1 mRNA downstream 13333 15534694 ~ 15554686 (-) False atxn2
XM_043240049.1 mRNA upstream 10917 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043238711.1 mRNA upstream 26470 15605437 ~ 15611094 (-) False LOC122345011
XM_043238710.1 mRNA upstream 26470 15605437 ~ 15611094 (-) True LOC122345011
XM_043240407.1 mRNA upstream 35500 15614467 ~ 15616462 (-) False LOC122345891
XM_043240406.1 mRNA upstream 35500 15614467 ~ 15616462 (-) True LOC122345891
XR_006251075.1 other downstream 200606 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 259579 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 303074 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 1265638 14292063 ~ 14302381 (-) True LOC122345141
XR_006250967.1 other downstream 1511314 14045477 ~ 14056705 (-) True rnf214
TU54499 other upstream 124785 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 146060 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 147815 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 147888 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 147888 15726855 ~ 15728108 (-) False emc6

Expression Profile