RNA id: TU54544


Basic Information

Item Value
RNA id TU54544
length 301
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G36986
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15713675 ~ 15713975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttgtgtgttataCGGCTTCTGCCTTCAATCTTTCCTTGCCATCAGTTAAGGCCAGATTTATTGGTTTagataaaaaattataactgtatttggcatttttaatgtaatgttatttaacCAAGGAAATGTGACAACACAGATCGCATCTGCTTTTTGGAATATAATATGCATCATTAacgcttttattaatttaaaaataaagggcGACAAACAATCGTGGCACATAAAAATAGcctacataaaaatgtataatagtaatagtaatacaAATGTGCGAACTGGTGGAAGCTGCCACTGAC

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54502 lncRNA downstream 4287 15703752 ~ 15709388 (-) False cenpv
TU54475 lncRNA downstream 148413 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 151312 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 151597 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 544317 15169047 ~ 15169358 (-) True G36811
TU54670 lncRNA upstream 15228 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 28765 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 29739 15743714 ~ 15755392 (-) False fam222ba
TU54686 lncRNA upstream 33547 15747522 ~ 15749497 (-) True G37076
TU54684 lncRNA upstream 36217 15750192 ~ 15751990 (-) False fam222ba
XM_043240512.1 mRNA downstream 4245 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 4245 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 4246 15704348 ~ 15709429 (-) False cenpv
XM_043240397.1 mRNA downstream 29239 15616601 ~ 15684436 (-) False ncor1
XM_043238308.1 mRNA upstream 12869 15726844 ~ 15728006 (-) False emc6
XM_043238745.1 mRNA upstream 43233 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 43233 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 43233 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 107894 15821869 ~ 15838717 (-) True flot2a
TU54499 other downstream 4287 15703752 ~ 15709388 (-) True cenpv
TU54482 other downstream 138858 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 138858 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 346262 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 405235 15296018 ~ 15308440 (-) False zfr
TU54667 other upstream 11052 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 12807 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 12880 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 12880 15726855 ~ 15728108 (-) False emc6
TU54705 other upstream 132061 15846036 ~ 15847036 (-) True LOC122345695

Expression Profile