RNA id: TU54651


Basic Information

Item Value
RNA id TU54651
length 1092
lncRNA type sense_over
GC content 0.34
exon number 4
gene id cxcl20
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15857240 ~ 15859335 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACATTCGTTTGGCCCTGCCGGTGAGGTGAATCATGAATCAGGTTGTTCTCACACTGTTGAGTGCTGTCGTGTTCGGAGCGACTCTTACACACTCTGCAGGGCAAGCAGGGGGGTTATCACAACGCTGCTTTTGCAGAGGCGAACTGCAAAAAGCAGTGAAGCCGAGATGGATTTACAGAGTTGAAATGTTCCCACCGAGTCCCTCTTGCTCAAAGACAGAGATTGTATTGACACTGATAAGAAAGGGAAAAGGAAAGCTAAACAGGAAGCCAAAGGTGTGTTTGGATCCAAACAAGAGGCAAGGACAGAGATTATTGAAGGGCAAAGGaaagcaaaacaaaaagtaaaggAGCGGAGGAAGAAAAGAGAAGATTGAGAAGTTTGACGACAAGGATGGCTATTGAAATTATTCaagattttcattattattattattaaccataTTTTCTTTATCGTTTcgtgattttaaacatttctctgATGAAACTACAGCTAATACAGGCTCATTTGTTATTGAGGCCAATGAACATTTTGCTCTTTCAGAAATGATGAGCACATcgatacactgcaaaaaaagtttttctagTATAGATTTCAAGACAAGAAAAAATTATAGTCTTGTTTTCAAGGAACAAAAACAAGCCAAATTTAAGTgggtttttatttgaaacaagcaaaataatctgtcaGTGGTTTAAACAACAtaatgctgttttctgtttgaaataagtttatttttcttaccccattggcagatttttggttttgatttgttttgcttgCTCTAAGCAAAAAGTCAtctaattttgacttttttttttctcaaaacaagacaatactttttatttgtcaagaaaatccttttttatttatgaatgtttagaCTAAGAAACTAGATGTGAAATCTAGGCTTGAAAATAGTGTTTTGAGTTTTTAGATGAAACGCTGTTTTGGTTAAAATAATGGATTATGTTCATAATTACTGCTTTATTTACTTTGTAACTTTTATTAATCCGTTTTTCTACAAACCTTTCTAATCCAGATGAAATCTTTGTAAAACGTAACCacgaaataaaaataattcatgcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54694 lncRNA downstream 15610 15840326 ~ 15841630 (-) True cxcl11.4
TU54664 lncRNA downstream 43307 15812915 ~ 15813933 (-) True G37064
TU54690 lncRNA downstream 74235 15777713 ~ 15783005 (-) True G37079
TU54683 lncRNA downstream 101848 15753971 ~ 15755392 (-) False fam222ba
TU54684 lncRNA downstream 105250 15750192 ~ 15751990 (-) False fam222ba
TU54657 lncRNA upstream 1993 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 35600 15894684 ~ 15978740 (-) True G37092
TU54728 lncRNA upstream 47199 15906283 ~ 15910873 (-) False G37093
TU54729 lncRNA upstream 47199 15906283 ~ 15910873 (-) True G37093
TU54730 lncRNA upstream 47199 15906283 ~ 15910873 (-) False G37093
XM_043240604.1 mRNA downstream 1461 15854920 ~ 15855779 (-) False cxcl11.1
XM_043240602.1 mRNA downstream 6592 15849821 ~ 15850648 (-) True LOC122345991
XM_043240103.1 mRNA downstream 10207 15846206 ~ 15847033 (-) False LOC122345695
XM_043240108.1 mRNA downstream 13396 15842993 ~ 15843844 (-) True LOC122345699
XM_043238539.1 mRNA downstream 15562 15840617 ~ 15841678 (-) False cxcl11.4
XM_043240598.1 mRNA upstream 16509 15875593 ~ 15878477 (-) True grsf1
XM_043240549.1 mRNA upstream 56280 15915364 ~ 15922607 (-) False si:dkey-245n4.2
XM_043240547.1 mRNA upstream 56280 15915364 ~ 15919118 (-) True si:dkey-245n4.2
XM_043238846.1 mRNA upstream 155702 16014786 ~ 16066854 (-) False rtkna
XM_043238847.1 mRNA upstream 155702 16014786 ~ 16053902 (-) True rtkna
TU54710 other downstream 1432 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 10204 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 129132 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 129330 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 129330 15726782 ~ 15727910 (-) False emc6
TU54865 other upstream 395065 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 517424 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 737771 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 828176 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 828331 16687415 ~ 16713167 (-) False G37277

Expression Profile