RNA id: TU54667


Basic Information

Item Value
RNA id TU54667
length 2645
RNA type TUCP
GC content 0.39
exon number 3
gene id emc6
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15725027 ~ 15728108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGACCGAGAGTGACACACGCTGTGTTTCATCCAAAACTTGTGATATTTTCCCGAATAATACATTCCTTATTGAAATATAGACTTAAACGCATGGTTTATTATGTTTGAGtggtaaatgtaaatgatgctTTCTTGAATCCCGGAGGCGGAAGCGTGATTTGTGTTTATCGTTACTTTGATCCTAACGCGTGTTTTTAGCATCGCAGCATGGCCACGCTAGCAGCCAAACGCGAGGGACCGCAGTTCATCAGCGAGGTGGCCGTCAGAGGAAACAGTGCTGTGCTCGACTACTGCCGCACGTCCGTGTCCGCGCTCTCCGGGGCCACGGCGGGCATCCTCGGCCTGACCGGACTCTACGGCTTCGTCTTTTATTTCCTCGCTTCTTTCCTGCTGTCTTTGCTATTGATTCTCAAAGCCGGTCGCCGGTGGAACAAGTGCTTCAAATCCCGACGCCTGCTCTTCACCGGGGGGCTCGTGGGCGGCCTCTTTACCTACGTTCTTTTCTGGACTTTCCTGTACGGAATGGTGCATGTGTACTAAGGGACTCCGTGTAGATGTAGTAAGATGATAGAGATGCCTCCGGGTAGAGAGCGCTGATTGATTTACCACAGGTTTTGCCCGTGAGTTTATGTTTAGGCAAAAAAGCTTATAATATTTTCTGTGTACTAATTGCACTgaaatttagatatttaaaaaaaaagtgtgttgtCATATTCTTTCCTCTTGTAATTTAACATTCTCCTTATTCTTATTCCAGGGCGAAGTTGGGTTTAAATCTAGTATGACAGCCCAACGGGGAAACTAATTTGTTTTCAGCTTAATTTTTGTGTATGATGTGCAACACTCAGTGAACTCCAGGCAACAATCAGAACTATGTAGAAACACAATACCGACTTTAACTGTATAAatcacattgttttattttagctagttTGAGGAAAATAAACCCTTCACCTCAAAGTGTGTGATTTCTTAAAGTacataatgtttgtaaaaatccTACAGTGTGGCTAGTTCTGTGCTGTTCTGTTGGCTAGCATATAAGTGCTCAAGGGTGTTGTACAAATTAATAACATAGTgtaatttgaattaatatatttttattattattactgtgaaCAGGTACCAGTtttattaagatcAACACTTTGGTATTACTCAAGATGAAAGCAATGCATACAAGCCATATTTTTGATATCAGGCTAAATTTGTATGAAATAATTGATCTTATTGCAAAACCTTTGTAACAGAAACTTCCACTGCCATTTAAAACATTAGGAGAGCAGAACAACACTTTGGTATGACTGAGCACAGACCCCCTATAATACCTCCTTTCATACATTCATACAGTGTTGGGAAGTTACTAGTTACATAAAAGTAATTGTATTGAGTTACAGTTGTTGagaaaaaatgcaattacacTTACTTATGAAAAagtagagtttttttttgtttcacaccTCAGAATCTCAAAGTAAGTCTTTAATTGATTTCTTCTGATTGACTGctctaaaatatgaaatactaaTGTTTCAGGACTTTAGGACATGCTTGTTCAATAATGCCTTTATTTCCTAAGTGGGTTTATGTATAGTTATTCTTCTACTTTTGGATTTCACTTTTTTGGGTACTGGTCTATTCttagaggggttttttttgttttgttttttactttttaacaaaaCCTGCCTTAAATTGTTCCTTGTTCAGAGGAATTATTAGTGCAGTCAAATATTACCTGTGTTGTTTAAAGACATTGTCACTACAGCTGAAAATGATTAACTTTGTACAACTGGCCAAGGGCGAAAATGTGATAATACTGCACAGTGCTTTAGAGGTTGAGGGGCCTGAGTAATACGACATGCTGCAAAACGACTTGATTATTGAGACCGTTTAGGCTTTgggggattaaaaaaaaagaaagtggaaTGGATTTTTATCACTGTAGGGTGGTTTTGTCCACACACTGCTAAGACATAGGCTAGTTATATGTAAACACCATGTacaagtgaattttgcatccaaTGTctcctttaaaattaaaacactatCATCTTAATTCAAGTGATGAAGGATCTGGAAAGTCTGACAGTCATCTGTGTTGAGTACTACTGTTAACCCTGCCTGGTTCACACGTTTGAAAGTGAttaacagttaaaaacattcgaaatttagaaaagtaatcGATAAGCAATCACATGTAATAAGTTACATTActtgttttcaaataattgtaaaagTTACACtacttgttacattttaaatagggtAACTTGTAATCTGCAACCTATTACATTTCCGAACTCATCTTCCCAACACTGCATTCACAGTAAATCCAATGGGATTCAGAATTTGAAAAAATCCTCTACTGGTTGCGTGGTGTTTTTAGGGTGGAAACAGGAGAAACAAGTTTTTCTGAAGTGTGCTGAGTCCTGAACGACACTGTGCCCTGTGGCCTTCTCTCAGAGCTGTGGGTTTTGAGTGCTGAGCTTGTGGgctgaatctctctctctggcttGTTATTGGGCACGCATGACACTGATTTCAATGGCTGCATCTCTGTTTCCTGTTTCTCCTCTCTCTTATGCCGCCCATCGTGGCGATGGTGACTGTGGTGTCGTACTTGCTTTCTCTCGCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54544 lncRNA downstream 11052 15713675 ~ 15713975 (-) True G36986
TU54502 lncRNA downstream 15639 15703752 ~ 15709388 (-) False cenpv
TU54475 lncRNA downstream 159765 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 162664 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 162949 15561722 ~ 15562078 (-) True G36967
TU54670 lncRNA upstream 1293 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 14830 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 15804 15743714 ~ 15755392 (-) False fam222ba
TU54686 lncRNA upstream 19612 15747522 ~ 15749497 (-) True G37076
TU54684 lncRNA upstream 22282 15750192 ~ 15751990 (-) False fam222ba
XM_043240512.1 mRNA downstream 15597 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 15597 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 15598 15704348 ~ 15709429 (-) False cenpv
XM_043240397.1 mRNA downstream 40591 15616601 ~ 15684436 (-) False ncor1
XM_043238745.1 mRNA upstream 29298 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 29298 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 29298 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 93959 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 93959 15821869 ~ 15838716 (-) False flot2a
TU54499 other downstream 15639 15703752 ~ 15709388 (-) True cenpv
TU54482 other downstream 150210 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 150210 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 357614 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 416587 15296018 ~ 15308440 (-) False zfr
TU54705 other upstream 118126 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 127024 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 526239 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 648598 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 868945 16596855 ~ 16633121 (-) True G37258

Expression Profile