RNA id: TU54670


Basic Information

Item Value
RNA id TU54670
length 580
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G37067
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15729203 ~ 15729893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATAATATCTTGACTCACATTTGTGCGTTCCACGTGTTGGTGCTTGTGTTGAAGTAGCCCCAGCTGGCAGCATTTTGTCCGGTCATGACACATTTGTCAAGGTTACACAACATGGAGACCACATAGTCTTGGATGGTGCCCGCATCACTGAAACTTGACAGGAACTCCGGCCTGATTCAAAGATGGTGGCACAACCAAAGCCAGTGGCCACGCTCAGGTGTGAATCTGGTTTGGGTAAGGAAGACAGGAAGTCAGCACCGCAGCGGCCGTCCTGCCAGGTGATCAGCTGACTGACATCTTCAGGATTGAATCTAATATTTCCATGATCTTCACTTAGCCGTTCACAGCCTAACAGAGagacaaatgaaaatataatcatCGATACCAtcctaattatttatttatcattgaaGACGAGTGCTTTCACCACTGTGTCACACCACAACGCAAGAAGCATCAAACATGCTGTCAGTAGTTGTTCGGTGTTAACCTGATTTAGATTTCCACAACACAACGCCATGCATTTGTCCACACACTCCAATGCACTTGACTTTTTTCAGCTTGTCTTTTGGTAAAGCG

Function

GO:

id name namespace
GO:0031503 protein-containing complex localization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54544 lncRNA downstream 15228 15713675 ~ 15713975 (-) True G36986
TU54502 lncRNA downstream 19815 15703752 ~ 15709388 (-) False cenpv
TU54475 lncRNA downstream 163941 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 166840 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 167125 15561722 ~ 15562078 (-) True G36967
TU54680 lncRNA upstream 12847 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 13821 15743714 ~ 15755392 (-) False fam222ba
TU54686 lncRNA upstream 17629 15747522 ~ 15749497 (-) True G37076
TU54684 lncRNA upstream 20299 15750192 ~ 15751990 (-) False fam222ba
TU54683 lncRNA upstream 24078 15753971 ~ 15755392 (-) False fam222ba
XM_043238308.1 mRNA downstream 1197 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 19773 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 19773 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 19774 15704348 ~ 15709429 (-) False cenpv
XM_043240391.1 mRNA downstream 44767 15616601 ~ 15684436 (-) True ncor1
XM_043238745.1 mRNA upstream 27315 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 27315 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 27315 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 91976 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 91976 15821869 ~ 15838716 (-) False flot2a
TU54668 other downstream 1095 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 1293 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 1293 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 1293 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 19815 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 116143 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 125041 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 524256 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 646615 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 866962 16596855 ~ 16633121 (-) True G37258

Expression Profile