RNA id: TU54683


Basic Information

Item Value
RNA id TU54683
length 1285
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id fam222ba
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15742740 ~ 15808380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAGACTACTTTTGTTTTGCGGCATTGGTTTGTGTCTAAAACAACCTGtttcataaaactaaaaaacattatattatgataatgatatataataataaagtaaaatttgaTGATTCGAATATagctaaataaacaatttaatatagCTAACTCTCACTAAAAAGGAATTAGCTAGTATATAAAGGCTTTCGTAAATTAcaacacatgcatataaattttttaatacagttaaaaaGATATGATGCATAAAAGGAATGACCCTTGATGTGTATAATATTTGTTCTTCAATAATTAATCACAGTCAAGTTTAAACCAGcaataatatgtaattattctTGCACTAGTTATAATGAAAGGTTAATGCAAAATGGACTGAAATAGATTccaaattataaaaacatcagacGGAGCTAGAGGTCTCAGCTATAGGAGTCAGCTCCTGTACATCTCTGTGTTGTTGTCTCTGTGTCCAACGTTTACTGAACGTTTGCAGGAGTCCGCGCTGGTTGGGCTCTGTAACCAATACACATGATATGATGtaggataaaaataaataacacacacatatttgtttagcaTCAACTACCTCTCTGAAGTTTAGTTGGGGAAGGTACAGGCAGGCATTTCCCAGGATCCTCAGTAATCACACCCAGGTTTCTGTTCCACTGGTTCCAGTTGACTTCCTCCACACTGAAAGAAAGAGGACACATGCTTCAATTATTGCTTATGGTTTCACTCAAGTGTGTTTGACAGTAAACACAGATCAATACAGGGCTAAGTGTGCATGAAGTATTATGCTTGTGTTTGAATGCAAATATCttcatttcaaaaatgaatcatCAATTTGCAAATGCAGATCTATGGTTTTGCGTGGAAGTCACCAGGGTCACCTGAAGCACCAGCGTTGATCAGGCTCCTGCCACCCGCCTAAGTCCTTTTCTTTCCCGGAGCGCAGCCTTGTCCTCAGACAGCGGGGAAAAATCCACTCCATATCCAAGTTTCCAGATGTTGGCGCTCTCTACAGACATCTCATCCACTCTTTGATTCATCAGAGCGATCAGCATGTTCAGCATCAAAATGTAAGTCATCACGATATACAGAATCAGCAGCACATAGAAGACCTGTATGTTTTGATATTGATCGGTGAACTCCAGATCTCCCATGCCAATCGTGAACTTGAACAACTCCAGAGTGGTGAAATATATGCCCTGAAATGGGGGCTTCTTACAGtcctcagaaaaaaaagaccgCCCCTTTTTGGAATGATCGTCAAGGAGAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54684 lncRNA downstream 1981 15750192 ~ 15751990 (-) False fam222ba
TU54686 lncRNA downstream 4474 15747522 ~ 15749497 (-) True G37076
TU54670 lncRNA downstream 24078 15729203 ~ 15729893 (-) True G37067
TU54544 lncRNA downstream 39996 15713675 ~ 15713975 (-) True G36986
TU54502 lncRNA downstream 44583 15703752 ~ 15709388 (-) False cenpv
TU54690 lncRNA upstream 22321 15777713 ~ 15783005 (-) True G37079
TU54664 lncRNA upstream 57523 15812915 ~ 15813933 (-) True G37064
TU54694 lncRNA upstream 84934 15840326 ~ 15841630 (-) True cxcl11.4
TU54651 lncRNA upstream 101848 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 105685 15861077 ~ 15865160 (-) True G37058
XM_043238308.1 mRNA downstream 25965 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 44541 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 44541 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 44542 15704348 ~ 15709429 (-) False cenpv
XM_043240402.1 mRNA downstream 96228 15616601 ~ 15657743 (-) False ncor1
XM_043238745.1 mRNA upstream 1816 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 1816 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 1816 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 66477 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 66477 15821869 ~ 15838716 (-) False flot2a
TU54668 other downstream 25863 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 26061 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 26061 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 26061 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 44583 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 90644 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 99542 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 498757 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 621116 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 841463 16596855 ~ 16633121 (-) True G37258

Expression Profile