RNA id: XM_043238743.1


Basic Information

Item Value
RNA id XM_043238743.1
length 3960
RNA type mRNA
GC content 0.48
exon number 3
gene id fam222ba
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15742740 ~ 15808380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTCTAGTTGGCGGAGAAACCGGAGCGATAGACGCTACTGCTCAATCTGGTGTAGGTGTCTCCGCGGCTGCCCGTGTTGAATTGGCCACTTTCTGTTGCGGTCCGGGGGATCTTTAACCATGCATTTCGGGCTTGTGGATTGGAGCTAAATGATTGCGTCGAATGTCATCCGCAAATAACTGGATCCGGGGTGTGAGGAGGAGTGTGTGGCCCATGTTGCTCTAggagtgactgtgtgtgtgagtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggtgtgtgggtgtgtgtgtgtgagtgtgtgtatatgagatGCTGGCCTGTCTGCCAGGGCCAGGTGATCTCTCCCTTCAGCTCCACCCCCACTCGCAGATGAACACTGGACTTCAGAAATGGGACACTCCACAAAGGATGAGATCTGCTCAGTATCCAACCCCTGCGGAATTGGATGCTTATGCTAAAAAGGTTGCCAACAATCCACTCACCATCAAGATCTTCCCCAACAGCGTCAAAGTCCCTCAGCGGAACCACGTTCATCGCACAGTTAACGGACTCGATACAGCTGGGCCCCGATATAGTCCTTACCCCTCCTCTCAGGCCACTGCCAAGACCGGTCTCCTTGCCATCGTTAAAGTGCCCCTCATCAAGGGTGTCATCAAGGACTTCGACGGCACACGGGCACGTCTGCACCCGGAGGTGATAATGAATGCCGCCGGCGGCCCTTATGCAGCCACCTCGGCCAGCACTTTAAACCTGCACCACCCATCACAGGGGCCTCCCAGAGCGTCCCAGAATCCGCAGGGGCTTCCTCCACGCCCTCAGAATCTCCAAACTTTACAACAGCCTGGGCCTCCGCACCAAGGACTCGGACACCGACCTTCCTCCTCCATGCCACAGCAACCCCAGGGCCTTCCGAGGCCCCAGACTCTGTCCCATGGGCCTTCTTTAGGCCACCCCAGTGCCCACCAACCTTCAGCAATCCTGCTTCCTCAGCAGCACCTACAGAACCCCCCTGTGAGCCTGCAGGTAGGTCCTCGGAAGTTGCCGGTTGCAGACGCCCCTCCTAACGTGACTGTTTCTACCTCAACCATTCCATTGTCCATGGCCGGAGGGCTTCACCAGGGCCGTCAGGCGGACTTGAACAGCATAGTGCACCAGATAAGCCAGTTCTGCCAGTCTAGGGCTCAGGGCGCCAGTGCCACATCAATGTGTGAAGGGCAGATTGCCAACCCGAGTCCCATTAGTCGAAATCTACTCATCAACGCCAGTTCTCGAGTCTCAGTGCATGCGGGAAACCCTAATGCACTCGCACCCGGCCTCATGCACCCATCGTGTGCTATTGGACCTCCCGATAAAGTGACTGCTTCTGCGCCAGTGAGTGCGATGCCTCCGCATAACATGGCCACAATGAACCACATGTATCACAGCGAGATTAAACAACAGCACCTGCAGCATCAAAGCCATCAACCACAGCGAAATCCCCAACAGCCGCAGATGAGGTCCTGGACTCAGCATCAGCTTGCTCACCTCCATCACATCTCGGAAGGGGGCGGACACCCCTGCAAACCCCCGAATCGTGACCCTGGCCTCCCTTGCAAGGGCATTACCTATCCCCCAGAAATGGGCATGGGGCAGCCTTATGCCATGAAACCCTCCAGCCCCTCGCCGCCACTTGCCAACAACAGCAACAATGCAATGCCTCCAGGCGCGGTGACACACTACACCAACGGGCAGTACTACCACCAGCCACCGGTGTGGGGTAGTATTCTTCCCACGCCCAACAGCGACAGCTCCGGCTCACAGGACCTCCCCGTGCCCTTCCATGGCACTGGCACAGGCAATACCAACCCCACCCCAGGGATGGACTGTGCCCCCGCCGGAGGAGCGGCCCATTACCGATTAGTAGGGGGTGCCTTAATAGGGCAGACTAATCTGATGCAAACGGCAGATTGCATGGGAGGGGACTTCCAGACGCCCTGCTTCCGAGATCAGAATCTCATCCTGATGGGGAAAATGCACAGGCCACCCCCTATGGGCCGGGTAGTGGTCCCCCCCTCTGAGACGCAAGGCCAGCACCCAGGGTACAGATAAGCTTCAGCCCACAAGCCTCAGACACAATCTCTCCTCAGTGAAGTCAGCCACACACGTGCGTCCTCGACACCTCCTGTTAGtcttaatgaaattacattacGAGAGGAACTAAATGAGCTCGAAATCTCAAGGATGATTGTtgatgaaacaaataaaaaaaccaaaaaaaacaagaatacaaACATGTCTAATGAAGAgcagtgttttgtgttattaatCTTGCAAGtgatcaattttttttctttaacaagtGCTTTTTTAAGGCACTAAAGGGATTTTTTTCCCACTTCTGTCTTATATATCTCCAGTTACCCGGATCTCAAGTGCTCCTGGGTTATTTCTGAACGTCTCTCTTGTGTTAGTGCTTactttattgaaatatattacaaataatatatatgtctTGTGAAATACATCACTTCTAAACTGAGGGCACCAGGCCTTCTGTTCATTGGACAACCAACCGGCTTTCATTTGACAGATCTTTGTTTTGAGCCCGTCTTATAACATCAAGATGGCTGACAGACTCAGAGCACTTCCCTCTTCAGCATGACACAGTCTTtgtcctttctttctttttttccagtgtCTGAGCTATGCGGGAATATGCCAGTCATTGGTTCTTTCAGACTGTTTCTAGGTGAAAGCTCTTGTCATTGGTTTCCAAACGAGAAGAGCTGCAGATGTTTCAATGTTAAAGCTgtgccatttttgttttacctGATCATTATACTCCCTTTATTTCTTAACATATGAGAAACTACTACTTGAATTGTATAGATGAGTTGTGCCGTTTCAGGTGGGTCGTATGTGGTTTAGCTGTACGTGGGTTTGCAGGACTAAACATACTACTGAAGGTGGTGTCTGTAGGCTTGTTACTAATATTATGATGTAGAAACTATGTACCAAATCAAGGGTTTATGATCCTGCGTTTTCTAATTCAtcctttataataatgtaaagtaGGAGTTGCTACTGATTCTTTTGTGAAGTGTGCTTGAATTGACCAAATTGATCACTTGCAAGATCATTTGTGGTTAAATTAAGGAGGactttttagaagaaaaaaaaagtcaaaaaggtGAAACAGCAGGTGAATTGCTTATTTTATTGTACACTGGCTTATCTACTGTACTGCTGTAACTTTAAAGAAGTGTAATAACTGTGTATGAATGTGGCTGCACATGGATATGGGTTCACAGATTTGGTGTGCATGTGATGAGCGCAGGTGTGTatgggcatgtgtgtgtgatagtgGATGGGGTGTGTGTGCTGGTGGGTCAGATTGTCTCGACTCGCTGTTGGTTTGCCTCCCCTCAACAGCCCTCATGAAGCCTTAAGTATTCGGTCCTTGGACTTTCCTTTGACAACAAGCATGATTCTAATAAAGGTATAATGAATTCTGATTTTGAAAAATAGACTATAAAGGAACAGCAtttttccttgtttatttttattaactcgAGCTTTTGTTGACTAGAAAAGCAATTCTTTAGAATTACTTTATAATGTAAACgaagaaataaagaatattttatcgTCATTGTTTTATAGCTGTGTGTAGTTCTGGGCTGTAACAAAATTCTTTTTATTCCATGTTTCAAAGCTTCAGTTTTGCAATTTGTGCTATTTATAATTCtgaactagatttttttttcctcattatttaaatctttttttttttttttttgcaattgctgTGAAATTAGAGAAAGCTTCTAGAAGCCTTTCTCGTATCTGTCACTCTGTGGCTGTCAATTGAATGCTTGGGAAGAATCTGAAGAGTGTGAGAGTTGTGCtactctttttttgtaatattgtaataataaaataaagttctaaTTTATGCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54682 lncRNA downstream 1816 15743714 ~ 15755392 (-) False fam222ba
TU54683 lncRNA downstream 1816 15753971 ~ 15755392 (-) False fam222ba
TU54684 lncRNA downstream 5218 15750192 ~ 15751990 (-) False fam222ba
TU54686 lncRNA downstream 7711 15747522 ~ 15749497 (-) True G37076
TU54670 lncRNA downstream 27315 15729203 ~ 15729893 (-) True G37067
TU54664 lncRNA upstream 13777 15812915 ~ 15813933 (-) True G37064
TU54694 lncRNA upstream 41188 15840326 ~ 15841630 (-) True cxcl11.4
TU54651 lncRNA upstream 58102 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 61939 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 95546 15894684 ~ 15978740 (-) True G37092
XM_043238308.1 mRNA downstream 29202 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 47778 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 47778 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 47779 15704348 ~ 15709429 (-) False cenpv
XM_043240402.1 mRNA downstream 99465 15616601 ~ 15657743 (-) False ncor1
XM_043238897.1 mRNA upstream 22731 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 22731 15821869 ~ 15838716 (-) False flot2a
XM_043238539.1 mRNA upstream 41479 15840617 ~ 15841678 (-) False cxcl11.4
XM_043240108.1 mRNA upstream 43855 15842993 ~ 15843844 (-) True LOC122345699
XM_043240103.1 mRNA upstream 47068 15846206 ~ 15847033 (-) False LOC122345695
TU54668 other downstream 29100 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 29298 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 29298 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 29298 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 47820 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 46898 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 55796 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 455011 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 577370 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 797717 16596855 ~ 16633121 (-) True G37258

Expression Profile