RNA id: TU54686


Basic Information

Item Value
RNA id TU54686
length 1954
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G37076
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15747522 ~ 15749497 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTAAATTTAATAGTTTGTGCAGGCTGCTCTGTCTCATCCAGGTAGTTAGAGTCCATGGGTCTCTTGTCCTTTGAGGCACCTTTCTTCTGTTTGGCCTTTGACCTTTCCTCCTCTGTCAGGTCATCCGTCTCCAGGAAGAATGTGGGGCTGCTGTCTCTTGATTTACTCATAGTGATGTCATACAGCAGAAATTAAAGCTGTTGTGGTATTATTTACAGATACAGGACATTAGGTTTCTATATTAGACAAATAAGCTCTAGGAAATGTGTAATTAGTCATGTTAAGGTTATAAGCAAATGGGACGTTCTTACAGTTGtgcttaaaaatgataattgaCTTAATGTTTCTTCCTTTGACCAgtcaaattgatttttgttaaaaacGAAGACTAAGAGCTGCTTTAGTAAGAGTAGAAGCTGCTTGAGTGTCGTAATGGATCACATTGTGTCTCCTTGTTTTAAACACTGTTAAAAGAGGAAGGGGTTACAAATGATCCAAATGGAAACTCTGTGACAGCTGAAGTTGAAGGAAATGCAGAACtactgctgctgtttttaataattatggaGATGTCATGATATCATGTTCTGATCATAAAACCACATAGGCCTGTATAAACCATCTAAAGGATCTCTAATTATCTTTGGTACacaacaaatctttttttttttttcaaagcaaaagtttCATTTTCCAAAAGAGGTTTTCAAAGATACAGAAGAAAGAGAACGGTGGAAATAGTTGCAGACTCTGATAGACCCTTGCCAATTGAATTATTGATATCTCTTCATGCTGTTACATGCTATACGATCCCATCCAGGGAATGGACCATTACTGTCCCATCAAGGATATCTTTTCCTGAGAATACATGGAAATGCGGTTTAGGCAAAATGCAATATACAATGCACTGGATATTCTgtgctgtaaaatataataactctAATATTTCTCTGTAAATTGTTTCTTACTCAGTTAAATTGTAAtcgtgcatttaaaaaaatgcattacactaTCTTTGGAAAAAAgacactgtaataaatataaaaaaagataaatgtccAAAAAACAGTTAGATACTAACACTGAACACTGTTTTGACTAGGTTCCATCTTAAGACAGTTTACCCTGCATCTCTCACAAAGCTGGTTTTGTAATCTTAATGCCAGATAACATATCTAATTATACTTGGATGCTATTTCAGTGATTGTCTTTCTGCTAAGAGCATTTAAACGACACAGTTATGAGAATATGAGCTAATGAATCATCTCAGCGTgcctttttgtttcagttaaaaGAGGAAGGGgataaaaacaattcagaatTCGTGTAGTTAGTTTCACTAAATTTCTAATTTGAACATTTGAGCATATTTGTATCTCTTTATTAAATAAGAACTCAGATGGTTGAAATCATTAGGCAATTATAATTAcgtgtaataaaaatatgcattcataaCAGCATCCAGTCACAGTTCCTCATTTAAGGCGCagattattataaacaatagaCAACCATAAAATAGACATAGAACATTATTCAGATATTCAGACAAAACAagcattaatgtttaatgtgcaTATCAAAGTAAAGTGTTAAGGATGCTagagatatttttaaatcatgaagAGAATTGAGCATATTCCATGCATATGTGAAAGCAGACTCCTCGATGGGTGAGGCAGTGCAGATTGTTAAACAGTCTAACAGATATTTAATGGATAGATTATGTgagtaaatgttgtttttacactAGATGATGACCTAATACACAATTGCAAGACGCTGGATAGTCTTACTTAGTGAAATATTATGACATGGTCTCTCTGTTAATAGGTTTAGATAATATTACAGCAGAAACTGTACATAACGCAGACACCATATTTAGATCATCTCACTTACAGCATTATGAGATTCAACACTTACTCTGCATGCTTTGGGTTGAGCAAAAACAG

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54670 lncRNA downstream 17629 15729203 ~ 15729893 (-) True G37067
TU54544 lncRNA downstream 33547 15713675 ~ 15713975 (-) True G36986
TU54502 lncRNA downstream 38134 15703752 ~ 15709388 (-) False cenpv
TU54475 lncRNA downstream 182260 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 185159 15562148 ~ 15562363 (-) True G36968
TU54684 lncRNA upstream 695 15750192 ~ 15751990 (-) False fam222ba
TU54683 lncRNA upstream 4474 15753971 ~ 15755392 (-) False fam222ba
TU54690 lncRNA upstream 28216 15777713 ~ 15783005 (-) True G37079
TU54664 lncRNA upstream 63418 15812915 ~ 15813933 (-) True G37064
TU54694 lncRNA upstream 90829 15840326 ~ 15841630 (-) True cxcl11.4
XM_043238308.1 mRNA downstream 19516 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 38092 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 38092 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 38093 15704348 ~ 15709429 (-) False cenpv
XM_043240402.1 mRNA downstream 89779 15616601 ~ 15657743 (-) False ncor1
XM_043238745.1 mRNA upstream 7711 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 7711 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 7711 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 72372 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 72372 15821869 ~ 15838716 (-) False flot2a
TU54668 other downstream 19414 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 19612 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 19612 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 19612 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 38134 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 96539 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 105437 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 504652 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 627011 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 847358 16596855 ~ 16633121 (-) True G37258

Expression Profile