RNA id: TU54690



Basic Information


Item Value
RNA id TU54690
length 427
lncRNA type intronic
GC content 0.44
exon number 2
gene id G37079
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15777713 ~ 15783005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgtaacggTTCTGCTTTGAGTGGGGATCGAACCCAGGTCTACTAGACTCAGTGCTCTGTGTAGACAGGCTGAGCTAACTTCCCAACAAATGAATTCAGGTGCAGAGGTAGCAAAAGCCAGAGtcaaaaagtcttcaaaaataaatcaaactttacttgaggaaaagtccaacaaaacaggaatcagtgactccaataaacagggaaaaacaaagtagacatgatagtcaaaaacataaactcaaGACAGACTTATCTCACAGTTGACACTGGAAACcaaggctcaagactgaacaaacaagcatgGCACAAACTCATTAAATAGTGCTGAACACAGGTGTCACCTATCAGGGCAAACGAAAGGAGCAGTTCAGCAGAAGCCTGGAGAGAGGCGCCACCTGCTGACTAGGAGGTGTATTACAGTCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54682 lncRNA downstream 22321 15743714 ~ 15755392 (-) False fam222ba
TU54683 lncRNA downstream 22321 15753971 ~ 15755392 (-) False fam222ba
TU54684 lncRNA downstream 25723 15750192 ~ 15751990 (-) False fam222ba
TU54686 lncRNA downstream 28216 15747522 ~ 15749497 (-) True G37076
TU54670 lncRNA downstream 47820 15729203 ~ 15729893 (-) True G37067
TU54664 lncRNA upstream 29910 15812915 ~ 15813933 (-) True G37064
TU54694 lncRNA upstream 57321 15840326 ~ 15841630 (-) True cxcl11.4
TU54651 lncRNA upstream 74235 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 78072 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 111679 15894684 ~ 15978740 (-) True G37092
XM_043238308.1 mRNA downstream 49707 15726844 ~ 15728006 (-) False emc6
XM_043240512.1 mRNA downstream 68283 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA downstream 68283 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA downstream 68284 15704348 ~ 15709429 (-) False cenpv
XM_043240402.1 mRNA downstream 119970 15616601 ~ 15657743 (-) False ncor1
XM_043238897.1 mRNA upstream 38864 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA upstream 38864 15821869 ~ 15838716 (-) False flot2a
XM_043238539.1 mRNA upstream 57612 15840617 ~ 15841678 (-) False cxcl11.4
XM_043240108.1 mRNA upstream 59988 15842993 ~ 15843844 (-) True LOC122345699
XM_043240103.1 mRNA upstream 63201 15846206 ~ 15847033 (-) False LOC122345695
TU54668 other downstream 49605 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 49803 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 49803 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 49803 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 68325 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 63031 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 71929 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 471144 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 593503 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 813850 16596855 ~ 16633121 (-) True G37258

Expression Profile