RNA id: TU54694



Basic Information


Item Value
RNA id TU54694
length 911
lncRNA type sense_over
GC content 0.34
exon number 4
gene id cxcl11.4
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15840326 ~ 15841678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACCAGCCATTAGCGAGGTGAAAACAGAAGATTAGCAACATGAAAATCATTACAGCTATGGTTATTCTGGGCTGCCTGCTTGTTGTAGAGGTGAAAGGTCAGGCTAGATCTCCCAAGAGCAGGTGTTTTTGTGCTAACCAAGGTGTGAACATGGTTTCTCCAAAACTGATTGAGAAGGTTGAAATCATACCACAAAGCCCCTCTTGTAAAACCCAGGAGATTGTCGTTACTCTGATAAATAGTATGGGGAAGAAGTGCTTGAACCCAGAATCCAAATTCACTCAGAAATACATCATGAAGGCTGTTAAGAAGAGGAGCCTGCATAAGAAATAGGAGAAGAATATAGCCTGCAAACGAATCCATAAGAGCTATCAGAAAAAAGTGAAGAACAGCAAGATTTCAGCACCGTATAATCAGTAACAAACATTCTTCTGACAAAtcatgaacaaaacattttaatgctgcGCAAATCTTTCTTTAATGTTTACTTcacataaatctttttttctgataaaaacaatcattattcACTGttgtatatttcaaaatagcAATGCAAAACATGCCTGATTTACAGTGTGTCATATGTACAGTTTtgcaaaataaagcttttgttGACATTTGAGTACTCATGATCATCCTATAGAGTCTagataaataaactaaataaaaaatgtcattataaagTATCCTGTTAGGAATAAATATTATAGTACTAAATCTAAACGTGAACCGAAaagtttaaaacataaatttagGTTTGCCCAATTAAGTCAAAATGATAAGTCATCTAGAAATCCTAATTGGGAAAGCTCTgcgctataaaaaaaaatcttaacaatCAGATTTTTTCTGTGCTAAAGAACCATGCTTTGAAACTGCTATGTAaaaccttaaaggaatagttcact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54664 lncRNA downstream 26393 15812915 ~ 15813933 (-) True G37064
TU54680 lncRNA downstream 31946 15742740 ~ 15808380 (-) False fam222ba
TU54690 lncRNA downstream 57321 15777713 ~ 15783005 (-) True G37079
TU54682 lncRNA downstream 84934 15743714 ~ 15755392 (-) False fam222ba
TU54683 lncRNA downstream 84934 15753971 ~ 15755392 (-) False fam222ba
TU54651 lncRNA upstream 15610 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 19447 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 53054 15894684 ~ 15978740 (-) True G37092
TU54728 lncRNA upstream 64653 15906283 ~ 15910873 (-) False G37093
TU54729 lncRNA upstream 64653 15906283 ~ 15910873 (-) True G37093
XM_043238897.1 mRNA downstream 1609 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA downstream 1610 15821869 ~ 15838716 (-) False flot2a
XM_043238745.1 mRNA downstream 32007 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA downstream 39738 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA downstream 41188 15757208 ~ 15799138 (-) True fam222ba
XM_043240108.1 mRNA upstream 1363 15842993 ~ 15843844 (-) True LOC122345699
XM_043240103.1 mRNA upstream 4576 15846206 ~ 15847033 (-) False LOC122345695
XM_043240602.1 mRNA upstream 8191 15849821 ~ 15850648 (-) True LOC122345991
XM_043240604.1 mRNA upstream 13290 15854920 ~ 15855779 (-) False cxcl11.1
XM_043240603.1 mRNA upstream 15610 15857240 ~ 15859335 (-) True cxcl20
TU54668 other downstream 112218 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 112416 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 112416 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 112416 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 130938 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 4406 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 13304 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 412519 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 534878 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 755225 16596855 ~ 16633121 (-) True G37258

Expression Profile