RNA id: XM_043238539.1



Basic Information


Item Value
RNA id XM_043238539.1
length 668
RNA type mRNA
GC content 0.36
exon number 4
gene id cxcl11.4
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15840326 ~ 15841678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aaaagcataaaaataaagcatctgaAATAAATCAGCCACAACTTTATTAACCAGCCATTAGCGAGGTGAAAACAGAAGATTAGCAACATGAAAATCATTACAGCTATGGTTATTCTGGGCTGCCTGCTTGTTGTAGAGGTGAAAGGTCAGGCTAGATCTCCCAAGAGCAGGTGTTTTTGTGCTAACCAAGGTGTGAACATGGTTTCTCCAAAACTGATTGAGAAGGTTGAAATCATACCACAAAGCCCCTCTTGTAAAACCCAGGAGATTGTCGTTACTCTGATAAATAGTATGGGGAAGAAGTGCTTGAACCCAGAATCCAAATTCACTCAGAAATACATCATGAAGGCTGTTAAGAAGAGGAGCCTGCATAAGAAATAGGAGAAGAATATAGCCTGCAAACGAATCCATAAGAGCTATCAGAAAAAAGTGAAGAACAGCAAGATTTCAGCACCGTATAATCAGTAACAAACATTCTTCTGACAAAtcatgaacaaaacattttaatgctgcGCAAATCTTTCTTTAATGTTTACTTcacataaatctttttttctgataaaaacaatcattattcACTGttgtatatttcaaaatagcAATGCAAAACATGCCTGATTTACAGTGTGTCATATGTACAGTTTtgcaaaataaagcttttgttGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54664 lncRNA downstream 26684 15812915 ~ 15813933 (-) True G37064
TU54690 lncRNA downstream 57612 15777713 ~ 15783005 (-) True G37079
TU54683 lncRNA downstream 85225 15753971 ~ 15755392 (-) False fam222ba
TU54684 lncRNA downstream 88627 15750192 ~ 15751990 (-) False fam222ba
TU54686 lncRNA downstream 91120 15747522 ~ 15749497 (-) True G37076
TU54651 lncRNA upstream 15562 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 19399 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 53006 15894684 ~ 15978740 (-) True G37092
TU54728 lncRNA upstream 64605 15906283 ~ 15910873 (-) False G37093
TU54729 lncRNA upstream 64605 15906283 ~ 15910873 (-) True G37093
XM_043238897.1 mRNA downstream 1900 15821869 ~ 15838717 (-) True flot2a
XM_043238896.1 mRNA downstream 1901 15821869 ~ 15838716 (-) False flot2a
XM_043238745.1 mRNA downstream 32298 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA downstream 40029 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA downstream 41479 15757208 ~ 15799138 (-) True fam222ba
XM_043240108.1 mRNA upstream 1315 15842993 ~ 15843844 (-) True LOC122345699
XM_043240103.1 mRNA upstream 4528 15846206 ~ 15847033 (-) False LOC122345695
XM_043240602.1 mRNA upstream 8143 15849821 ~ 15850648 (-) True LOC122345991
XM_043240604.1 mRNA upstream 13242 15854920 ~ 15855779 (-) False cxcl11.1
XM_043240603.1 mRNA upstream 15562 15857240 ~ 15859335 (-) True cxcl20
TU54668 other downstream 112509 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 112707 15725027 ~ 15727910 (-) True emc6
TU54666 other downstream 112707 15726782 ~ 15727910 (-) False emc6
TU54665 other downstream 112707 15726855 ~ 15727910 (-) False emc6
TU54499 other downstream 131229 15703752 ~ 15709388 (-) True cenpv
TU54705 other upstream 4358 15846036 ~ 15847036 (-) True LOC122345695
TU54710 other upstream 13256 15854934 ~ 15855808 (-) True cxcl11.1
TU54865 other upstream 412471 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 534830 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 755177 16596855 ~ 16633121 (-) True G37258

Expression Profile