RNA id: XM_043240604.1



Basic Information


Item Value
RNA id XM_043240604.1
length 575
RNA type mRNA
GC content 0.36
exon number 4
gene id cxcl11.1
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15854920 ~ 15855808 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATAAAATGAAGCCCATCAGCTCATTTGTTCACATTTGGTCAGTCAAGCAGCTTAAAGTGAAGACCTTCAAGAAACTGAAACAATGAAGACTGTGGCAGCTCTATTTGCTCTTGTTATTTTGGCCATTGTTGCTGTTGAAGGAAAACCCGGGATTGGAATCCAAAGATGTTTATGTCTTGGTGCCGGTCTCAAAATGGTGAGACCAAAGCTGATAGAGAAAGTTGAAATTCACCCTGTCAGTCCATCCTGTGGACATCTGGAGGTTGTTGTCACGCTGAAAAATGGTGGAGGTAAAAGATGTTTAAACACAGAGTCCTTGTTTACCAAGAATATCATTGACATGATTGAAAAAAAGTCCAGGAGTGCTCAGTAAAATGTGTGAAGGTTGTGGCCACCATGGACTGTATCGATTCTGTTCATTTATAActattatgtgttttatatattatatttacacgTTATGTTATTtgtagtttaatttatttcagaagCATGTTGGATGTTCTTCTGTATGTTGTTATCTGTCAAAGGaaaatttctaataaaataaattgaaggTTTGATCATATTTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54694 lncRNA downstream 13290 15840326 ~ 15841630 (-) True cxcl11.4
TU54664 lncRNA downstream 40987 15812915 ~ 15813933 (-) True G37064
TU54690 lncRNA downstream 71915 15777713 ~ 15783005 (-) True G37079
TU54683 lncRNA downstream 99528 15753971 ~ 15755392 (-) False fam222ba
TU54684 lncRNA downstream 102930 15750192 ~ 15751990 (-) False fam222ba
TU54651 lncRNA upstream 1461 15857240 ~ 15859084 (-) False cxcl20
TU54657 lncRNA upstream 5298 15861077 ~ 15865160 (-) True G37058
TU54727 lncRNA upstream 38905 15894684 ~ 15978740 (-) True G37092
TU54728 lncRNA upstream 50504 15906283 ~ 15910873 (-) False G37093
TU54729 lncRNA upstream 50504 15906283 ~ 15910873 (-) True G37093
XM_043240602.1 mRNA downstream 4272 15849821 ~ 15850648 (-) True LOC122345991
XM_043240103.1 mRNA downstream 7887 15846206 ~ 15847033 (-) False LOC122345695
XM_043240108.1 mRNA downstream 11076 15842993 ~ 15843844 (-) True LOC122345699
XM_043238539.1 mRNA downstream 13242 15840617 ~ 15841678 (-) False cxcl11.4
XM_043238897.1 mRNA downstream 16203 15821869 ~ 15838717 (-) True flot2a
XM_043240603.1 mRNA upstream 1461 15857240 ~ 15859335 (-) True cxcl20
XM_043240598.1 mRNA upstream 19814 15875593 ~ 15878477 (-) True grsf1
XM_043240549.1 mRNA upstream 59585 15915364 ~ 15922607 (-) False si:dkey-245n4.2
XM_043240547.1 mRNA upstream 59585 15915364 ~ 15919118 (-) True si:dkey-245n4.2
XM_043238846.1 mRNA upstream 159007 16014786 ~ 16066854 (-) False rtkna
TU54705 other downstream 7884 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 126812 15726855 ~ 15728108 (-) False emc6
TU54667 other downstream 127010 15725027 ~ 15727910 (-) True emc6
TU54865 other upstream 398370 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 520729 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 741076 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 831481 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 831636 16687415 ~ 16713167 (-) False G37277

Expression Profile