RNA id: TU54729


Basic Information

Item Value
RNA id TU54729
length 4570
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G37093
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15906283 ~ 15910873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgtctttttataaaaaaaaaaactttattaggACAACAATCCATTGcttcaaaacattcaatcaCAAAACTAAAATGGTTATGACATTAACAGATACATAAAAGATGACATGGATACTAGTCCAAAAACTGTAATGCTATACAATTGCAGGATTGCTACGTCATTGACTGTAAGATGTTTCTCGAAATGCATATACGGTAGGTTTTAAAGTAATGTCCTGctatataatagaaaaaaaaactttttaaatgatgatgacaatataagatatttacaaagaaagagaaataattttattttttttggtagaACTGCTCACTTTCTTAACGGGAATGGCAAAATTTTTGGGTGATAGTATAGAAGTctgaaatactgtaaaaatacatagGTGCTACACTACATTTTTTGCTAACTTTAAAAACAGTGAATTAATATAATTCGTGTTGCTAAAGAAACACCTTTTTCCCTTAAAGGATAAATCGGGAGGAtgtgtgaagaaaaaagaatcatgctaaagaaaataagaaacataTCTGAAGGAACAAGAAAACGTTTGAAACTtgatattttaagcattttaagtCCATTTGATGGTCTGCACAACTACCAGAATCCCTTCTTAAAGAGAAGAGGGAGCCGTGGGTGAAATTTATCAAACTTTAAAGTATATGAATGTATGGGCCAAAGAGTTGATGGAGATCTCGCAGTTCATTCTTTGCTGGTGACATCATTAAGTTTCAAAGACTCCTCCTTAGCTTTATTCTTTTTGTCCCGTACTTCTCCCTCCACGTGCCACCCCACCATGAGCTGGTACACAATCACACCAATAATGGATCCAATAAATGGGGCGAAGATGGGCACCAAAAACCAACACTCTCTGACACTGTTGCAAACCAGAGGAGAAACACTTGTAAGTTTTTACTGAAGTCACTGACAAATTagcagatacattttttttacattttggttcaTGATGTACCTAATTAGTTAATGCTATGGGAATTATGAACTTACGTGAAGACTTCACCACCCCAACCAGCCATGGAAGTGAAAAGACGAGGCCCAAAATCCCTAGCTGGGTTGACTGCATAACCAGAATTGAAGCCCATGGAGAGTCCAATGATAAGGACGCTGAACCCCACCGTGAAGGCCTCAAGACCTTGGGGGATTGGATTGTTGTAGGGGTCCACAATGGCCAGGATGCAGACAATCAGAGATGCTGTGCCAATCACCTGTGAAGATGGTTATACTTGATAATAAATATAGTGCATTTATTGTGATATCAATGATGGAGGGGAAAATTTTGTTTCAATTAAGTAGCATTGTAAGAGTTTTGGGAACGTCTCAAGGgaacgtgtgtgtttgtgtatttaatgaAAGATTATTCACAAGTTTGCAGTTACTGACCTGGTCAAAAAAACCATTCAAGATGGTGAGATGTGGGTTTGGGTATGTAGCAAAAATACCAGCAGTGGCTTTTTCCCCAACTAcaagcaattcatttttttctccgGCATATTCATacattgcatctaaaataaaaataaaagtgtaagaAAAAGAAGGTACATACACTTTCGACAAGAaagtaagtaaataagtaatattaCATAACATGTACCATGGTATTCAGCAAAGATAATTGCAGCACCCAGGAAGGCACCAAGTGTTTGGAACAGAAAGTACACAGGAAACTTTCTCCATTTTTCTCTTCCCAAGAGGCAGAGAGCGAATGTAACTGCTGGATTTAAATGTCCGcctaaaaaagaataaaaaaaagctcttttattTCATAAGTTGATCCACAAAgacgttttatatataaaaaaaaaaccctcagtgCAACAGcttaatatgcaattttagaGGAGTTTACTAACCTGACACCTGGCCACAAATCAAGATTCCAAGGGTAGCGGCAAAGCCAAAAGCAAGGTTTACAGAAAGGAAGCGACCATGACTTTCTCCACTTAGTACCATTTGGGCAACAGCACCACAGCCAAACATCTGTCAATAGTGTGAAATAAGAACACGTGTTAATCActgtttgaaaaacaaacattttttatatgtacCATTCAGGACAATGAAGAGCCCAAGTgcaaagaaatgcttttttgacttttttgattTTACCAGCTAAGAGTAGGTCTTTCACATTATTGTGAGTCACAACATGTAGTTAAAACTGGTGATGAAAATAGCAGGTTGCCGTTTCAAACTctgctaaaaataaactaaGTATTCCCTTTTGTTCAAACACCACAAATCTACTGTGACTAAGGGATGCAATTTTTCAGAGCATCTCAGACAGGTCATTACAAGTCCGTTCTGACAAACAGCAATTGCAAGTTACTGTTCAGACTTGTGGTTGAAGTTTCCACTGGAAAGGTCACCTCAAGAGTTGAAGTGAAATACCTGTGGCATTATACCAATTTATCAGGATCACAGAGCGACTTTACAGAAGTCATGTAATAGCCAGGGTGTATAGAAGAGCTTTCATGAGAGTAAATCTCACTAACAACATCAACACAATTCTAAAAAAAGCAGTTCTCCAAACCAATTTATCACCTAAACATGGCCCTAAATGTGTCCTTTTGTATTCAGCAATGGCAgctaaatgcaaatacatttccttggtttattcagttcattttgcttttctgtGACCAAAGACCTATTGTTCCTGTTTCTGCTTCTAGAAAGAGCATCCGCTGATAAAGTCACCTTCACAGACAAAGAGCATGTTCAAAGTATCAAAATACCTTTTTGCTGCTCAGCAAACATCACACCCATTGAGCGATACAGTTATCGCATGACCTTTCTATTTAAGAATTATCTATGGTATAGCCCATGCCACACACCTTTAAAACAAACTATAcgtgtactttttaaaatgagttgtTTCTAAAGTGCTTGTAAAATTGCATAATTGCCCTGTGAAGATTTTGTAGCAGCAGTTTGGTGTCAGTTCCATGTTTAATGAGTGCCATACTTCAGTTCACTCTGACTGCCTGACATAACACCCCTGACCGCAGTGCCAAAGGTTTCTTTGCTGTAGTCTGCCGTGTGTGACACATTTATCAAACATCGAGTTAAGTGTAATGTTTGTGAACTTCCTTAAAGTGATTTCACAATGTTGAAAACTAGTGGTAAATCGTGGGCCTGTAAGGCATGTTTTTCTGCTAGTCATTTTTTCACTCTTgtgaaatatctaaatatcttaaaattactgcatcaaaaatttcattttacatgtttacagCAGGATTAATtggatttcaaaataaatcctCGGTGTTGGTGTGGCAAATGTGCTCTGATAATATTGACTCAATGACTTAAGGTGATTCATTAAACCTCAACATACTAAGTTGTCACGTGAGGATTGTGGTATTAAAATAGATGTGATGAAGTACTATTAATCAAAAGTTTTGGCACGCGCCTCTGTTCTGTCGCAAGTTGCATTATTACATGCCTATCTGTGATGTTTGTTACAGAGAAAATTGTCACTAAATTAGGGAGGatgtttaagtatttttttctgtgtatcaAGAGCATTTCTCACGAGCAGACTGAGATACTATCcacctttttttctgttttatctatTTGCAAATGACTTCCTTTTAAGCGTAGTTCCTCAGTTCATAATTAACATTCATCAATAAAAGACCATGCAGGAAACTTCCTTTATGGGTAGTAAAGGaaagctttaaatgttttgagcaTAGAATCAAAGGCAGTGGGATGCAAAATTTCGCcactgactttcactgtatttaaaaaggtttttttttgtgctatacAGAAGAGTACAGGTTTGAGTGACTTTTAGAATTGTCAATTCTACAGATTTTAGGACTTTCTGCCTGAAGAATTCCTTGGATGAGCTGCAAGAAACTAAAATACACTGGTGTAAAATCTGCATTTCAAAATCCACACCAATGTGATCGCAATAATGCAGATATAAATGCTAATTAGCAATAATCTACCATTTACTTATTTGCCTGAGGAAATTCTGAGCGCATGTACCAAAGTAAACATTACCGTCTCTTTGTTATGTTTGTCATTAATCTGAGTGAGGAGAAAAGCAACTGGTGCTCTACTGTAACTCTCACACGAGCAACATTAcactaaaatatacaatttatttctgtcttttattacagattatgtgacaaataaacatGCTGTTTCAGACTATTTGTACTAAGTTGCACTGACCTCAGCTTTGATGCTTAGAATAAGTAAGTGATGACTGAGGAGAAATACCCACCACCAGAATGAGAGTTCCCAAGCATTCAGCCAGTCCCTGGCGCAGCAGCTTGTTGCGGATCTGGAAAGTTTGTGCAAGCTTATCCAGCATGACCTTCTGGCAACCCATCTTTCAACCAGGTCCGGATGTCTCCCTTTGCCTGTGTGAAACAACCTGTATGTCCCTCAGAGATGTATGCTCATGTGAAGGCCAGTGCTCTGCTCTTATAGACATGATAGACCAGGACCAGCCCTCCATGCATCTGCCTGCCCCCTTCACACGTCTGCCCCCTTCACACacgtcctcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54657 lncRNA downstream 41123 15861077 ~ 15865160 (-) True G37058
TU54651 lncRNA downstream 47199 15857240 ~ 15859084 (-) False cxcl20
TU54694 lncRNA downstream 64653 15840326 ~ 15841630 (-) True cxcl11.4
TU54664 lncRNA downstream 92350 15812915 ~ 15813933 (-) True G37064
TU54690 lncRNA downstream 123278 15777713 ~ 15783005 (-) True G37079
TU54738 lncRNA upstream 27247 15938120 ~ 15938836 (-) True G37098
TU54726 lncRNA upstream 39458 15950331 ~ 15978740 (-) False G37092
TU54885 lncRNA upstream 420058 16330931 ~ 16332077 (-) True G37212
TU54932 lncRNA upstream 479051 16389924 ~ 16460289 (-) True G37239
TU54933 lncRNA upstream 479051 16389924 ~ 16482086 (-) False G37239
XM_043240598.1 mRNA downstream 27806 15875593 ~ 15878477 (-) True grsf1
XM_043240603.1 mRNA downstream 46948 15857240 ~ 15859335 (-) True cxcl20
XM_043240604.1 mRNA downstream 50504 15854920 ~ 15855779 (-) False cxcl11.1
XM_043240602.1 mRNA downstream 55635 15849821 ~ 15850648 (-) True LOC122345991
XM_043240103.1 mRNA downstream 59250 15846206 ~ 15847033 (-) False LOC122345695
XM_043240549.1 mRNA upstream 4491 15915364 ~ 15922607 (-) False si:dkey-245n4.2
XM_043240547.1 mRNA upstream 4491 15915364 ~ 15919118 (-) True si:dkey-245n4.2
XM_043238846.1 mRNA upstream 103913 16014786 ~ 16066854 (-) False rtkna
XM_043238847.1 mRNA upstream 103913 16014786 ~ 16053902 (-) True rtkna
XM_043238848.1 mRNA upstream 103913 16014786 ~ 16042028 (-) False rtkna
TU54710 other downstream 50475 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 59247 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 178175 15726855 ~ 15728108 (-) False emc6
TU54666 other downstream 178373 15726782 ~ 15727910 (-) False emc6
TU54865 other upstream 343276 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 465635 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 685982 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 776387 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 776542 16687415 ~ 16713167 (-) False G37277

Expression Profile