RNA id: TU54936



Basic Information


Item Value
RNA id TU54936
length 844
RNA type TUCP
GC content 0.49
exon number 6
gene id LOC122344728
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16376266 ~ 16378515 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGTGCGTCATGTATCATGCTCTCCACCGCTCAACATGGCGAGAAGATAGTGGTACAGATTCACATCATCCGCGGAACAGCCATCATTTAAGTGGACCAGGTGGTTTGGCgtagtgttttcttttttctttctttttattgtttgtcaTATGGAAACGGATCTCATCGAGAAGATGCCGTGCCATAACCAGCAGCTGAATAACAGCGAGAGCCCCGAACACGCCGCGAAGCACGTCCGCTTCGCCCGCAGCAGCCCCGCAGCCGAGACCTGTCAAGACGAGCCGTGCGAAAACCAAACCCCGAGCGACATCCAACGACAAATAGGACCTCAGCTGAAGCTCTTGCCGTTAAATGACCAAATACGAGAACTTCAGACAATCATTCGGGACAAAACTACCAGTAGAGGTGATTTTGTGTTCTGTGCTGATAGATTGATAAGATTAGTGGTGGAGGAGGGTCTCAATCAGCTTCCATACAGTGAATGCACTGTAACTACACCAACAGGACATAAGTATGAAGGTGTGAAGTTTGAAAAGGGAAACTGTGGGGTTAGCATTATGAGGAGTGGGGAGGCCATGGAGCAAGGCCTAAGAGACTGCTGCAGATCAATCCGTATCGGGAAGATTCTGATCCAGAGCGATGAAGAGACACAAAAGGCTAAAGTTTACTATGCAAAGTTCCCTCCTGACATTAGCCGAAGGAAGGTTCTGCTCATGTACCCTATACTTAGTACAGGCAACACTGTAATAGAAGCGGTGCGGGTGCTGAATGAACACGGCCTGCAGGCCAAACATATCATACTACTGAGTCTCTTCTCCACTCCACACGGTAAGACACACGCAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54885 lncRNA downstream 44431 16330931 ~ 16332077 (-) True G37212
TU54726 lncRNA downstream 397768 15950331 ~ 15978740 (-) False G37092
TU54738 lncRNA downstream 437672 15938120 ~ 15938836 (-) True G37098
TU54729 lncRNA downstream 465635 15906283 ~ 15910873 (-) True G37093
TU54932 lncRNA upstream 11429 16389924 ~ 16460289 (-) True G37239
TU54933 lncRNA upstream 11429 16389924 ~ 16482086 (-) False G37239
TU54935 lncRNA upstream 11429 16389924 ~ 16458389 (-) False G37239
TU54948 lncRNA upstream 57974 16436469 ~ 16443757 (-) True G37247
TU54958 lncRNA upstream 96213 16474708 ~ 16485114 (-) True G37249
XM_043238258.1 mRNA downstream 119516 16253952 ~ 16256992 (-) True LOC122344710
XM_043239220.1 mRNA downstream 238345 16115390 ~ 16138163 (-) False si:ch211-204c21.1
XM_043239219.1 mRNA downstream 238347 16115390 ~ 16138161 (-) False si:ch211-204c21.1
XM_043239218.1 mRNA downstream 238347 16115390 ~ 16138161 (-) True si:ch211-204c21.1
XM_043239221.1 mRNA downstream 246522 16115390 ~ 16129986 (-) False si:ch211-204c21.1
XM_043238264.1 mRNA upstream 34562 16413057 ~ 16416005 (-) True LOC122344715
XM_043240100.1 mRNA upstream 409314 16787809 ~ 16789122 (-) False LOC122345693
XM_043238522.1 mRNA upstream 879971 17258466 ~ 17259947 (-) True LOC122344899
XM_043239185.1 mRNA upstream 937886 17316381 ~ 17321058 (-) True LOC122345238
XM_043238288.1 mRNA upstream 950701 17329196 ~ 17345615 (-) True LOC122344736
TU54865 other downstream 119769 16254149 ~ 16256739 (-) False LOC122344710
TU54710 other downstream 520700 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 529472 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 648400 15726855 ~ 15728108 (-) False emc6
TU54666 other downstream 648598 15726782 ~ 15727910 (-) False emc6
TU54976 other upstream 218360 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 308765 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 308920 16687415 ~ 16713167 (-) False G37277
XR_006251078.1 other upstream 3488891 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 3488891 19867386 ~ 19935576 (-) False kcnt1b

Expression Profile