RNA id: TU55147



Basic Information


Item Value
RNA id TU55147
length 1096
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G37363
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17351315 ~ 17352410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATTCTTAAATTTAATTGGGCACTGCGGTCACGTGGTCATAAGACACAAGCAGATTTCTGTGTGTTCAGTCAAAACTGCCTGTTTCACCAAATGGAGACATTACTTCCAGTGGCTTTAAGCAATGTGAAGAGCCATCTAGTGTTTAGTGTAAGGAACTACATGTTATTTGTTGTAGTGTACTTCattgatgcatttttacattttcatacataGCTTACAACTTTATGTTTCATAGCAGGCCGCCATCAGTGTGCTCAGGccttatttatcttttttatcttatttatcttttttaatttcaaactaaACTTCTAAGAATGTATGTAACATagctgtaaaacaaaacaaaaaaatagataatacataaatgagcataaaatattcaagtaaaaCAATTGCAATACAAAGAAATCAATAACCTGCACTGTTCGTGTCTTGTCAGTAATGTATTGTAAAACGCCCCAACACCGATGTGTTTTGTATTATGCAGTAACTCAACAAATATGCATATAGGCTAGATATTAGTAAACTACAAATGATTATGAAGGAGTATGTTTTGagtatgttaataaaaatgtggctgttttaagtaataatatttaattcgttgctcttcattttcatttcaaaaccatttaaatgtcctaaaatatgttttatgattttatgaattatattttcttgtaattctgaaatgttttaaatcctTTAGAAATTAGTACATGGAAACTGTATGTATGAGACAAACATATTATAAGTCTGACAGACCTTGCTAACTGCTGACTGTGTGACAAAAAGCTAGATGTACTGAATAAGTACTGCaggttgatttaaaataataaaatgaaaaaatagaaTGATTTATACATTGAATCGAACTGTTAAAAGCTCTTTGGCAAGTGCTAAAcaagtaatgaaaataaagcgaAGTGAAAACTCATTTGGTGATGATAGCAACAGCTTTCTTCATCCAAGCGTTGTTACTGAGTAGAGAGAGCATGAAACGAGCCACATCTCCTCTGGACACAGACTGACCGATCGGCAGGCCGTTTTCATCAGGGACATAATAACCTTCATGAGTGAGGAACTCGTCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55140 lncRNA downstream 1349 17346469 ~ 17349966 (-) True LOC122344738
TU55103 lncRNA downstream 186163 17162677 ~ 17165152 (-) True G37340
TU55038 lncRNA downstream 460125 16890704 ~ 16891190 (-) True G37310
TU55037 lncRNA downstream 460997 16889042 ~ 16890318 (-) True G37309
XR_006251031.1 lncRNA downstream 492339 16858600 ~ 16858976 (-) True LOC122345772
XR_006250975.1 lncRNA upstream 293686 17646096 ~ 17686024 (-) False LOC122345155
XR_006250974.1 lncRNA upstream 293686 17646096 ~ 17684773 (-) False LOC122345155
TU55241 lncRNA upstream 293689 17646099 ~ 17679650 (-) False LOC122345155
TU55242 lncRNA upstream 293689 17646099 ~ 17684795 (-) True LOC122345155
TU55243 lncRNA upstream 293689 17646099 ~ 17679650 (-) False LOC122345155
XM_043238290.1 mRNA downstream 935 17347291 ~ 17350380 (-) False LOC122344738
XM_043238288.1 mRNA downstream 5700 17329196 ~ 17345615 (-) True LOC122344736
XM_043239185.1 mRNA downstream 30257 17316381 ~ 17321058 (-) True LOC122345238
XM_043238522.1 mRNA downstream 91368 17258466 ~ 17259947 (-) True LOC122344899
XM_043240100.1 mRNA downstream 562193 16787809 ~ 16789122 (-) False LOC122345693
XM_043239777.1 mRNA upstream 2519 17354929 ~ 17359741 (-) True LOC122345546
XM_043238260.1 mRNA upstream 29621 17382031 ~ 17384148 (-) True LOC122344712
XM_043239051.1 mRNA upstream 234413 17586823 ~ 17592357 (-) False ccnh
XM_043239049.1 mRNA upstream 234413 17586823 ~ 17591447 (-) True ccnh
XM_043239050.1 mRNA upstream 234413 17586823 ~ 17591422 (-) False ccnh
TU54999 other downstream 638148 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 638148 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 718194 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 972820 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1094576 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 2514976 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 2514976 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 2516404 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2699249 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2773179 20125589 ~ 20127390 (-) True G38140

Expression Profile