RNA id: XR_006250974.1


Basic Information

Item Value
RNA id XR_006250974.1
length 3877
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id LOC122345155
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17646096 ~ 17686024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTAATCAACAGTTTATTTTCCACAGAAGATATTATCTCTCATTCGAGTCATACTCGCAAatctttcaaaaatacattatatatgaacaaaacaaTCGAAAGAAAGGGAATCGAGGGCGCATTTTGACGCCGAAATAAATCGCGGTCTGCGACTGAAATTAACGCGAGATGGACAATTAAGAAATGAAcggatattttcatttttgcttctTTGTAAAAAGTTCGTAAAACGTCATAAATACCATTTCATACATCGAACACTGAaactttgtaaatgtaaaaaaaaataataatcaaaagctCGCATAGCTGTCAATTCGTTGCAGTAAACGCATTTCTACTTTAAGCTTTCcgctaaaaaaaaagcttctttagaacaaaacaagaaaatgtttaagcggTTAAGAGGCTTTtcgttattttgttttatttcattttatttttgatttgctATTCATTcaatcagttgttttttttcttcgtttATCATCAGTTATGCGTGTAGGCTAATCATAACCGATAAATAGACTATCACGTTATAGTTTTGATATTCGGGGAGAATATCGAACATTACCAGACGAATATTTCAGTCCCGAAATATgaattctctttctttcttttctgtttaaagTGCATAAAATCCATCAAACACGTCTCCGCCGTAACATCTCGAAGTCATTTGTTCGTCAGTGTGCTTTGTAGAAAACGAGGgcatgcattttaacattttctgcaATCATCAAGTGAAcgtgcaaagttttttttatttatcaacgtggcatttaaaattaatttttaaatgaaaccatGCGCGATAGTGCTGCATTGTATTGTTCTAAGCTTGAAAGTGGTtatcacaatgtaaaaaaaaaaaaaacaatcgtGCAATAATCATTACGGCTCGTGATCTTGAGGACCCATTTATAACGTATCACGTGTAACCCGCGTATTGGCCAGAAGCGCCAGCgacactgtattttaaattacatttttaaaagaaaattaaccTTTGAAATGTCTCTTTGCTTACTAACACGTTTCCCGGCTTTATTAAGAGCTCtgggtcgagtaagaaagcggAAAGTACAGGCTAAAAGACTTTTCCctcgcgtttttttttttttttttttttttacagcaggCGACTGCTTCAAATTTCCAGCAAGAGCGACGATAGTTAGTCATCGCTCATAATTGAGGGTCCAGAAAATATAACGAACTAGACAAGAAATCTACCTTAAAGACAACATTTGGATacgtgcttttttttaaactcttgcTGCTCACCTATTATTGTGCGTGAAGCCTGTTGGATTGGATTTGATTTCCCCAGAATACAAATTAGTGTAGTCTAACGTGtccagaaaaacagaaaaagacgCAAGGCTCCTAAATAATGTAAAGCTTATATTTCTAAATCTATCACACTTGATTACAGTTTGATACCGTTGTGTCTGTCagtttgctttttaaaggtgATGACCATCTTAGATTAATATAAATGGAAgctttgagagagagagagagaaaataatacataatcaAATACAATTAAGATGATGGATCGCTTTATGAGTTTCTGAATGGGATGTTCAGGTGGAGTCGTCGTTCTTGTCTCCTGATGAGCTTCACACCACTAGATGTCGCCGCGTGTTACAGAAAGGCATCTCGGACTCCGATTTCGTTTCTCACTTCGAACGAATTTCTAGAGAACGACCGGCTGAGGCAATATTTAGAAATGACTTGAAACATCATTAAGAATagagtttattatttattttttttgtttgctgtctgTCACGTTTAGAGGAGTTGTGCACGGGGTTATGTGTCCTGCACTGAAATAAAGATGTAGCCATAGCAGTCGAAATAGGGAAGGGAAAGCTCAAGTTTATCAACAccgtaacattttttttaaatatgcaccaTTTCATCTCAATTCTATGTTAATCGTATGTGTGCACTGCATTATTCGGCTGAGCTAAACAATAGAAAGAAAACACGAATGTCTTTGTATTGAATTACCTGGAAATCAGTCTATCTCCACTCCCTCTTcacatatctctctctctctctctctctctctatctctctctatctctctatctatcatACGTTTAACTCACTTAAACAACAAGTCTCTCCATATATTTTATAGCCTAtttcatatgtatgtatatgtatatctatagcGGTGATATTAATGATTGTGAAAAGAACCacgagagaaaaaaatagaaataagcCACAGGGTTCGTTTAGATGTTAGACTATTTAGATTTCCCTCCTTCTCATCTTTTGCACGCCTGATTAAAGAGGCTGTCCATTAATTACACgtctgtttttgattaaataagtgACCGTGTTGACAATTTGTTGcctgtattttttctttttgccgtATGTTTATGTACGTCGATAATATAATCATTatcttttgaatttaaaaacactatttaaacGTTGGGGGAAATGTCCTGTTCAAGATAcgcaaaactataaaaaatgttttaattaatttaaagtagtAGTCTAACGGTTATAGAAATGTGTTAGTGAATACAAAACTCCTACATTTGTCAATTCCTCACAGTGAAACGGCTTTTTTATGTCTCTAAAACATTCTTTAATTGTTATTAAGACACGTTTGGATTGGGCTTTAGGGGTGTCTTCGGGAATTGCCTGAAATCTCTTTTCATCCTGCGCTAAGTCGAAATTCGTCTTAATATGCACCTGACCTTAACTTTTACTAAGTATAGATTAGGTTACTTGGTCCGGAAAACCAATcaaaggcaaaaaaacaaaaacaaaaaaaagcttagaATTGAAAGCTAAGTAACATGAGAATATCGTGAAAGTAAATTTAGATTTGAAGAGAGCTAACTGAATTCATTCTCCAATATGCTATACAGAAACAGTTTTATATTAGAATTCAGGAGGTTATTGTGAGTCATTGTCTCCCGTTATATTTATAGGAGCTGTGGGAAAGTTTGAAATCCTTTTCTCTATaggttttaaatatgcataagtATGGTAATCGCGGTCCTGCTGTGTTGCAAACAGGCGCAGCAGATCACACATGTGCTACACAACTTCGGACCGTACGAAGTCGCCGGGATGAGGACATGCAGAGTCTAAGTAAGTCCCGTTTTGCTCATTGACGTCTGTTCGTATAAAGATATATAGCAGGGCTGTCTGAAGTTTAAGGCGGAAAACATGCGAGCATAGGACAGCACGTGTGTTGACCCACTGGGAGTAAATCTTTACGTGTGCCCGTCTGACCACTTCTATTGGGTGCCAGATCAGTCGAGCAAAGGTTCACAAGATGAAGATCAGACGCTTTACGAGTAGGAACTATGAAGAAGAGATGCTTAAGATTGCGCAAAAAAAAGTTCTGGAAAAGAGTCTCGACTCGAAAGTGAACGCAATTATATTAATAGGAAGTGGATATTAGGCCTATTGATGACTTTAGCGgactgaaaaaaatgtgaccATTACCACTGGAAGTGTGCAGAAGGAAACTGCCATCAgtgttaataaatgataaactaACATGAGTGATGCTTCTGAGGAGGTGCGTTGCTCTTTGATGTGAGGAAGAAAGGTTGAGAGAGCTCTCTCCAGCACATGACACCCTCATTAGTGACCAGCAGCCAAAGACGCGGGGTCACAAACCCAATGAGTTGACCATTTCATTCACTGTGACCTAGTGCTGCGGTGCGGTCTGACAGCAACATACACAGTAGCTCGAATAACCCTTGAAACTTGTGAAGAGTGCcttattttttatgaaaccgATATAGGGTCCAACTTTTCAACATGCTTGtagattttattcattcaataaattgtgcatttttctaaaaaagggAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55147 lncRNA downstream 293686 17351315 ~ 17352410 (-) True G37363
TU55140 lncRNA downstream 296130 17346469 ~ 17349966 (-) True LOC122344738
TU55103 lncRNA downstream 480944 17162677 ~ 17165152 (-) True G37340
TU55038 lncRNA downstream 754906 16890704 ~ 16891190 (-) True G37310
TU55037 lncRNA downstream 755778 16889042 ~ 16890318 (-) True G37309
TU55259 lncRNA upstream 207184 17891957 ~ 17893318 (-) True G37439
TU55274 lncRNA upstream 261774 17946547 ~ 17946764 (-) True G37453
TU55276 lncRNA upstream 269727 17954500 ~ 17954747 (-) True G37455
TU55277 lncRNA upstream 270778 17955551 ~ 17955769 (-) True G37456
TU55279 lncRNA upstream 277070 17961843 ~ 17962070 (-) True G37458
XM_043239832.1 mRNA downstream 13934 17616213 ~ 17632162 (-) False tmem161b
XM_043239831.1 mRNA downstream 14017 17616213 ~ 17632079 (-) True tmem161b
XM_043239051.1 mRNA downstream 53739 17586823 ~ 17592357 (-) False ccnh
XM_043239049.1 mRNA downstream 54649 17586823 ~ 17591447 (-) True ccnh
XM_043239050.1 mRNA downstream 54674 17586823 ~ 17591422 (-) False ccnh
XM_043238994.1 mRNA upstream 1728 17686501 ~ 17755766 (-) False mef2cb
XM_043239005.1 mRNA upstream 1728 17686501 ~ 17746521 (-) False mef2cb
XM_043238998.1 mRNA upstream 1728 17686501 ~ 17746519 (-) False mef2cb
XM_043239000.1 mRNA upstream 1728 17686501 ~ 17746519 (-) False mef2cb
XM_043239004.1 mRNA upstream 1728 17686501 ~ 17746519 (-) True mef2cb
TU54999 other downstream 932929 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 932929 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1012975 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1267601 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1389357 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 2182613 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 2182613 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 2184041 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2366886 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2440816 20125589 ~ 20127390 (-) True G38140

Expression Profile