RNA id: TU55280



Basic Information


Item Value
RNA id TU55280
length 231
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G37459
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17963704 ~ 17963934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGAGCGTGACCAATCCGGCTCTGGGATCAACACCCATCTCTCCGGAGAGAATACTCAACATGACAATGAATTTCTCTGTGACCTCCACCTCGCCATGAGGCAGGATCTTCAACTCAATGCTGCGTACACCCCCTTCCCCGTCTCTGAAACTAAACGTCCCGTTCACTGGATCACCAATGTCTGTGTTTACTGATGGTAAAACCTCATTTGAGTTTGGACCTAGAATCTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55279 lncRNA downstream 1634 17961843 ~ 17962070 (-) True G37458
TU55277 lncRNA downstream 7935 17955551 ~ 17955769 (-) True G37456
TU55276 lncRNA downstream 8957 17954500 ~ 17954747 (-) True G37455
TU55274 lncRNA downstream 16940 17946547 ~ 17946764 (-) True G37453
TU55259 lncRNA downstream 70386 17891957 ~ 17893318 (-) True G37439
TU55281 lncRNA upstream 450 17964384 ~ 17965101 (-) True G37460
TU55282 lncRNA upstream 2365 17966299 ~ 17967103 (-) True G37461
TU55283 lncRNA upstream 4426 17968360 ~ 17968602 (-) True G37462
TU55284 lncRNA upstream 6284 17970218 ~ 17970616 (-) True G37463
TU55285 lncRNA upstream 8244 17972178 ~ 17972581 (-) True G37464
XM_043240157.1 mRNA downstream 59369 17899764 ~ 17904335 (-) True lysmd3
XM_043240158.1 mRNA downstream 67771 17893508 ~ 17895933 (-) True mblac2
XM_043239003.1 mRNA downstream 217183 17689645 ~ 17746521 (-) False mef2cb
XM_043239002.1 mRNA downstream 217187 17689645 ~ 17746517 (-) False mef2cb
XM_043238993.1 mRNA downstream 217188 17686501 ~ 17746516 (-) False mef2cb
XM_043240294.1 mRNA upstream 63287 18027221 ~ 18034972 (-) True arrdc3a
XM_043238311.1 mRNA upstream 73653 18037587 ~ 18042062 (-) True LOC122344755
XM_043240295.1 mRNA upstream 79580 18043514 ~ 18046387 (-) True LOC122345814
XM_043240144.1 mRNA upstream 422039 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA upstream 422039 18385973 ~ 18534386 (-) False fam172a
TU54999 other downstream 1250537 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1250537 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1330583 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1585209 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1706965 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1903452 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1903452 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1904880 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2087725 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2161655 20125589 ~ 20127390 (-) True G38140

Expression Profile