RNA id: TU55282



Basic Information


Item Value
RNA id TU55282
length 805
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G37461
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17966299 ~ 17967103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGAATAATGATTTTGGCAAATGAAGTGAATCCCAGTTCATCTGGCATGCTGACAATCTGTGCTCCACCTTCTGCTTCGGTGAGGTAGATAAAGAACGCCTCCTGTCCCTCCGGCTCCTGATCATTCAGTATTAGGACGCTGACCTCCACCTCATTCTGTCCCTCCAATAGTGTGACAGTTTGGGTCTCCAAGGCAAAGTCTTCTCCTTCCAGGGCCCATGTGCCATTATACTCCCGGTGAAACTGGGCTGCATTCACCTCCGGGGTTCTAAGTCCTGCATAGGCTCTGATTTTGGCACTCACCACTCCTGTGAGCCCTGCCGACCTGCGTACTCTCAAAGCAAGCTTCTGTTGGGGCGCACCCTCCTGACTGTCTTCAGAAATCTGTATTATTGCTGGCCCTATACTTAAAAACCCACTAACCACATCGTTAGCACGGATGGTAATTTTAGCGACGCTATTTTTAGCCACAATGAGAGGCTGAACTTCGATTGAAGGCAAACTGGCACTGAGAACACGGACGCTGGTTAAGTTCAAGTAAAAATCCTCGTCTGGTTCAGTTAGGGAATCGTCAAGAATAGACAAGCGAATGGCAGCAGATGTTTGGCGGGAATCAAATGGAAGCTGGCCGTCTGCTACCGATGCAAAGTCCTTGTCAGGCTGAGCAGAGCCAGGCCATGTCTTGTAGGAAATGCTGGAACGGTTGCTGCGGAAGCCATAGAGGCGCTGGACGTAGAGGGTGATGGTCTGTACGTCCTCCTCAATCACAAGCTGTCGAGAATCAGGACGAAACTGATATAATCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55281 lncRNA downstream 1198 17964384 ~ 17965101 (-) True G37460
TU55280 lncRNA downstream 2365 17963704 ~ 17963934 (-) True G37459
TU55279 lncRNA downstream 4229 17961843 ~ 17962070 (-) True G37458
TU55277 lncRNA downstream 10530 17955551 ~ 17955769 (-) True G37456
TU55276 lncRNA downstream 11552 17954500 ~ 17954747 (-) True G37455
TU55283 lncRNA upstream 1257 17968360 ~ 17968602 (-) True G37462
TU55284 lncRNA upstream 3115 17970218 ~ 17970616 (-) True G37463
TU55285 lncRNA upstream 5075 17972178 ~ 17972581 (-) True G37464
TU55286 lncRNA upstream 6684 17973787 ~ 17974258 (-) True G37465
TU55290 lncRNA upstream 38467 18005570 ~ 18006634 (-) True G37469
XM_043240157.1 mRNA downstream 61964 17899764 ~ 17904335 (-) True lysmd3
XM_043240158.1 mRNA downstream 70366 17893508 ~ 17895933 (-) True mblac2
XM_043239003.1 mRNA downstream 219778 17689645 ~ 17746521 (-) False mef2cb
XM_043239002.1 mRNA downstream 219782 17689645 ~ 17746517 (-) False mef2cb
XM_043238993.1 mRNA downstream 219783 17686501 ~ 17746516 (-) False mef2cb
XM_043240294.1 mRNA upstream 60118 18027221 ~ 18034972 (-) True arrdc3a
XM_043238311.1 mRNA upstream 70484 18037587 ~ 18042062 (-) True LOC122344755
XM_043240295.1 mRNA upstream 76411 18043514 ~ 18046387 (-) True LOC122345814
XM_043240144.1 mRNA upstream 418870 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA upstream 418870 18385973 ~ 18534386 (-) False fam172a
TU54999 other downstream 1253132 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1253132 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1333178 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1587804 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1709560 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1900283 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1900283 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1901711 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2084556 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2158486 20125589 ~ 20127390 (-) True G38140

Expression Profile