RNA id: TU55291


Basic Information

Item Value
RNA id TU55291
length 398
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G37470
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18012391 ~ 18012788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgaatatttattattgttgttacaCAAACCAAGCAGCAGAATTTATGGTGCTCTCTGGCCAGACTGCCACTCAACCTACATGACATTTCCATTCAAAACAATACTAAAACCTtcacaaattaatttagtgaTAATTATAttcacatatgtatatattttaaaaaaaaatcacatataaaAAGGCAACTTAAAAACTAACAAGATTTAGTGCAAAGGcagaaacagtaaaaaacaaaaacaactattgtttttattttacaattttcagTACAAAAAATAGTGAGGTTAGAGATGTGTGTCTGCGATGGGAATCCGTCGCAGCTCTACGATTTGAGAGTTAGCCACGCTGCCTCCATCGTGACTGCCGTGGACTGACTCGCTGTCGCTCACATTAAGG

Function

GO:

id name namespace
GO:0032838 plasma membrane bounded cell projection cytoplasm cellular_component
GO:0005930 axoneme cellular_component
GO:0097014 ciliary plasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55292 lncRNA downstream 2114 18009515 ~ 18010277 (-) True G37471
TU55290 lncRNA downstream 5757 18005570 ~ 18006634 (-) True G37469
TU55286 lncRNA downstream 38133 17973787 ~ 17974258 (-) True G37465
TU55285 lncRNA downstream 39810 17972178 ~ 17972581 (-) True G37464
TU55284 lncRNA downstream 41775 17970218 ~ 17970616 (-) True G37463
XR_006251027.1 lncRNA upstream 337637 18350425 ~ 18358262 (-) False LOC122345727
TU55425 lncRNA upstream 337646 18350434 ~ 18353479 (-) False LOC122345727
TU55417 lncRNA upstream 340803 18353591 ~ 18361161 (-) False LOC122345727
TU55418 lncRNA upstream 340803 18353591 ~ 18361161 (-) True LOC122345727
TU55419 lncRNA upstream 349625 18362413 ~ 18365467 (-) True G37565
XM_043240157.1 mRNA downstream 108056 17899764 ~ 17904335 (-) True lysmd3
XM_043240158.1 mRNA downstream 116458 17893508 ~ 17895933 (-) True mblac2
XM_043239003.1 mRNA downstream 265870 17689645 ~ 17746521 (-) False mef2cb
XM_043239002.1 mRNA downstream 265874 17689645 ~ 17746517 (-) False mef2cb
XM_043238993.1 mRNA downstream 265875 17686501 ~ 17746516 (-) False mef2cb
XM_043240294.1 mRNA upstream 14433 18027221 ~ 18034972 (-) True arrdc3a
XM_043238311.1 mRNA upstream 24799 18037587 ~ 18042062 (-) True LOC122344755
XM_043240295.1 mRNA upstream 30726 18043514 ~ 18046387 (-) True LOC122345814
XM_043240144.1 mRNA upstream 373185 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA upstream 373185 18385973 ~ 18534386 (-) False fam172a
TU54999 other downstream 1299224 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1299224 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1379270 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1633896 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1755652 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1854598 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1854598 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1856026 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2038871 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2112801 20125589 ~ 20127390 (-) True G38140

Expression Profile