RNA id: TU55717



Basic Information


Item Value
RNA id TU55717
length 332
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G37776
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19132813 ~ 19133144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTGGTGCAttagctcattttaattaagtAGATGAATAATCAAagatttatacacacacacacgggaaaacaaacacattgtTAGGCCCTGcataatttatatttgcaaTAATTGTTTTGCATTGGATATGGATTCTTTCCTGTCCTAAACAGAATATTGGGATtgaaatgcattactttccagTGGAGCTGTTGTAGCTATTGACTATATGTCTTACCAGCTCAATTTGAGGACACTGATGAGCCCTTTGGCCCATCCTAGCCTCAGTTTCCCCTGAAGATTCAACTGTTTCAGTCTGCTTTATCTCAATCGGagatgtcttttaaaatgtt

Function


GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU55715 lncRNA downstream 9505 19123025 ~ 19123308 (-) True G37774
TU55695 lncRNA downstream 57039 19068914 ~ 19075774 (-) False G37757
TU55692 lncRNA downstream 57039 19070502 ~ 19075774 (-) True G37757
TU55526 lncRNA downstream 319042 18813564 ~ 18813771 (-) True G37637
TU55429 lncRNA downstream 741165 18373317 ~ 18391648 (-) True G37571
TU55737 lncRNA upstream 42319 19175463 ~ 19177884 (-) False mtx3
TU55738 lncRNA upstream 42319 19175463 ~ 19177884 (-) False mtx3
TU55741 lncRNA upstream 91208 19224352 ~ 19225429 (-) True G37792
TU55750 lncRNA upstream 148721 19281865 ~ 19282092 (-) True G37799
TU55751 lncRNA upstream 149233 19282377 ~ 19282691 (-) True G37800
XM_043240461.1 mRNA downstream 1481 19124324 ~ 19131332 (-) True lhfpl2b
XM_043238716.1 mRNA downstream 49735 19079743 ~ 19083078 (-) False otpb
XM_043238715.1 mRNA downstream 49744 19079743 ~ 19083069 (-) True otpb
XM_043239698.1 mRNA downstream 180078 18949562 ~ 18952735 (-) True entr1
XM_043239794.1 mRNA downstream 183454 18938322 ~ 18949359 (-) True snapc4
XM_043240714.1 mRNA upstream 1228 19134372 ~ 19156518 (-) True homer1b
XM_043240713.1 mRNA upstream 1228 19134372 ~ 19151176 (-) False homer1b
XM_043240055.1 mRNA upstream 43088 19176232 ~ 19183978 (-) False mtx3
XM_043240054.1 mRNA upstream 43088 19176232 ~ 19183977 (-) True mtx3
XM_043240053.1 mRNA upstream 62874 19196018 ~ 19216739 (-) True serinc5
TU54999 other downstream 2419646 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2419646 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2499692 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2754318 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2876074 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 734242 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 734242 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 735670 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 918515 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 992445 20125589 ~ 20127390 (-) True G38140

Expression Profile


TU55717 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU55717 Expression in each Bioproject

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TU55717 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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