RNA id: TCONS_00011119


Basic Information

Item Value
RNA id TCONS_00011119
length 1117
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_005298
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18453207 ~ 18454407 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attaaaacGTATGAAGTTAAGCAAAAATCCAGACAAAACCTTTTCCAGTGTGGAATACCATAAACTTGACAAAAAGACtataacattaatataacattaatgaaactatgaatttttacaatatgtaaaCAGTAACTACATCCAACAGGTTatgcataatatataacaaacaagaacacagaacagaatagaataaacAAGTCATTGCAATATGTTTGCATAAATTTCAGATAAACTCCCATCTTTATGATTAGATGTTAGTTTGcaataatattaatgtaactaTCAAAAAGACTATTTGTAAAACACTTACATGACTACAGTTGTGGATCATGAAGTGTAAAGTCTTAAATATTCGCCAACAAATTTCTTCATAACAGAAGCCTACAAAATCACAGACTAATTTACATCTCACTGTGTTAATCGCATGCAGAACACACAGAATAACACTTCCAGCATTTATTTTCCTGGCATCTGACGCAAAGCATGTTGTAAACTAGAAACCCTTTTTAACAGTGATTGAGTAAAAGGATTTCATTTCATTCTTTCAAGCTCTTCCTCCATCTACCATGACTTGTCTTTCAGGAGCCAGTCGCACAGATGTTGCTAGAGCAGCTTTACGGGTGTAGGTGGTGCAGCGCTGTAGGATCTCTCGAGTTTGTGGTCTGGGTGGGACCTTTGGAGCTCCGACTCCCTTCATCGGATGTCCAGTGTCAGAGTTGACAGGACTGGACTGACCACTGGACAAAGCGCTATCGCTGCTGTCCGCCTCTTTATCCTGCCGTATCAGAGGGCCCTCATCTTCTTCTGAGCTGGACATGCTTGGGCTCATGGAGGTGGTGTCTGAAGAGCTGAAGCTGAAGTCGGTTCCATCATCGCTGAAGCTGCCGGACTCTTGACGCTGCACTTGATCGGTGAAGTGACTCTGAGGTTCTGACAGGATTTCTAGGGAGCTAGACTTAAGGAAACGATTGATTCTGTTTCGCTGGGGCTCTGGTTTGGGAGAGTTGCTGGTAGACAGGTTGATGGTGGAGCTGTGAAGTTTCCTCTGAAGTGTTTGAAGGCCAAAACTGGGGCTGCTGTAGAGCTTTAGATTCCTACTGAAGACCTGTTGCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010174 lncRNA downstream 38691 18413442 ~ 18414516 (-) True XLOC_005297
TCONS_00011118 lncRNA downstream 41454 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010172 lncRNA downstream 41454 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010171 lncRNA downstream 41583 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011117 lncRNA downstream 225477 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010204 lncRNA upstream 823983 19278390 ~ 19282009 (-) True XLOC_005315
TCONS_00011120 lncRNA upstream 1602564 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00011121 lncRNA upstream 1860588 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00010219 lncRNA upstream 1952179 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00010222 lncRNA upstream 2126159 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010170 mRNA downstream 38668 18410608 ~ 18414539 (-) False XLOC_005297
TCONS_00010173 mRNA downstream 38671 18411584 ~ 18414536 (-) False XLOC_005297
TCONS_00010167 mRNA downstream 44619 18381982 ~ 18408588 (-) False XLOC_005296
TCONS_00010169 mRNA downstream 44641 18382288 ~ 18408566 (-) True XLOC_005296
TCONS_00010168 mRNA downstream 59799 18381985 ~ 18393408 (-) False XLOC_005296
TCONS_00010175 mRNA upstream 13659 18468066 ~ 18519822 (-) False XLOC_005299
TCONS_00010176 mRNA upstream 14162 18468569 ~ 18483348 (-) True XLOC_005299
TCONS_00010177 mRNA upstream 97190 18551597 ~ 18560500 (-) True XLOC_005300
TCONS_00010178 mRNA upstream 111146 18565553 ~ 18568834 (-) True XLOC_005301
TCONS_00010179 mRNA upstream 117048 18571455 ~ 18578432 (-) False XLOC_005302
TCONS_00010161 other downstream 746306 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 1454765 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 1551448 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 1706660 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 1706891 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010183 other upstream 284006 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 1734762 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2121233 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3115376 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 3218542 21672949 ~ 21680620 (-) False XLOC_005333