RNA id: TU55751



Basic Information


Item Value
RNA id TU55751
length 315
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G37800
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19282377 ~ 19282691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAATCATTATGTTTATGCAGTTATAAATGCTTTGCGTTTCTAACATTCAACAAAGGTAGcattactaaattaaaacacCTAATGCCAAATTAAATAGCACACAGCTTAAAGGCTCACCAGATGTGTAATATTTCGTCTTATTTCATGTAGTCATCCGACACACTGTGACATGTAAACgtgaaatgaataaacactTCTAGTAGCTCTACACCTTCTAATCTGGCCTACTTTACTTTGCACTGAACGGGGGCCTTCACGATTAACGCTGTACCTCTGATTAATCACAAAAACCTGTGTTGTATCCTTACACTGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55750 lncRNA downstream 285 19281865 ~ 19282092 (-) True G37799
TU55741 lncRNA downstream 56948 19224352 ~ 19225429 (-) True G37792
TU55737 lncRNA downstream 104493 19175463 ~ 19177884 (-) False mtx3
TU55738 lncRNA downstream 104493 19175463 ~ 19177884 (-) False mtx3
TU55717 lncRNA downstream 149233 19132813 ~ 19133144 (-) True G37776
TU55752 lncRNA upstream 3936 19286627 ~ 19286848 (-) True G37801
TU55882 lncRNA upstream 223230 19505921 ~ 19510282 (-) True G37877
TU55941 lncRNA upstream 419378 19702069 ~ 19702343 (-) True G37926
TU55943 lncRNA upstream 420729 19703420 ~ 19703685 (-) True G37928
TU56076 lncRNA upstream 673737 19956428 ~ 19956662 (-) True G38019
XM_043238313.1 mRNA downstream 61211 19217735 ~ 19221166 (-) True cdk7
XM_043240053.1 mRNA downstream 65638 19196018 ~ 19216739 (-) True serinc5
XM_043240055.1 mRNA downstream 98399 19176232 ~ 19183978 (-) False mtx3
XM_043240054.1 mRNA downstream 98400 19176232 ~ 19183977 (-) True mtx3
XM_043240713.1 mRNA downstream 131201 19134372 ~ 19151176 (-) False homer1b
XM_043239112.1 mRNA upstream 14608 19297299 ~ 19313145 (-) False LOC122345207
XM_043239111.1 mRNA upstream 14608 19297299 ~ 19313144 (-) False LOC122345207
XM_043239113.1 mRNA upstream 14608 19297299 ~ 19312531 (-) True LOC122345207
XM_043239239.1 mRNA upstream 31457 19314148 ~ 19323539 (-) True erap2
XM_043239240.1 mRNA upstream 31457 19314148 ~ 19323010 (-) False erap2
TU54999 other downstream 2569210 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 2569210 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 2649256 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2903882 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 3025638 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 584695 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 584695 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 586123 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 768968 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 842898 20125589 ~ 20127390 (-) True G38140

Expression Profile