RNA id: XM_043240331.1


Basic Information

Item Value
RNA id XM_043240331.1
length 1132
RNA type mRNA
GC content 0.36
exon number 7
gene id LOC122345844
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20394731 ~ 20396734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcattgttaCCAGTGTTCACATGCATGTAaccatttgatatatttatggctGACCtgattatttgtaataaatccactattctttccttttttattttttgtttgtttgcaaagtaaatgtaaaatagaaatgaagtaAATGCTACAAAATGTATAAAGCCATACAGAGTGAATAAACACTCGGGTTTAGTGTGTCAATAAAAACCACTGTAAGCAATTGTGTCCATGATTGTAATGAatacgttgttgttgtttatataaagaataatatatGCGGTTGTAAACAATACCGTAGTGacaagttacttttaaaatatttactcaaCATTATTGTAATTATCTTTACtgttaaaactgcttttatttacGCGTAGACTGAAAATGCCGCTTTGAAAGCTAAATGGGAACCTTTTCATTGAGCTGCGTCGGACGTTATTCAGTGAAACACTGCGACGAAGGCGGTTCGCTTGCAATGCTGAAGTAGTATGTTTTAGAAGATGGCCGTTACTCTACACACAGATCTGGGTGATCTCAAGATAGAGTTGTTTTGTGAGAAGGCCCCGAAAAGCTGTGAAAATTTTATTGCACTGTGCGCTAGTGGGTTTTACAATGGATGTATTTTTCATCGAAACATAAAGGGCTTTATGGTCCAGACCGGAGACCCAACAGGGACAGGCAAAGGAGGGACCAGTATTTGGGGAAGAAAGTTTGAAGATGAATTCAGTGAACATCTGAAGCACAATGTCAGGGGGGTGGTGGCCATGGCCAACAATGGACCAAACACAAATGCATCACAGTTCTACTTCACATATGCAAAACAGCCTCACCTGGACATGAAGTACACAGTTTTTGgaaaAATTATAGATGGATTAGATActctggatgaactagagaaaCTCCCTGTGAATGAAAAGACCTTTCGTCCCCTTAACGATGTCCGTATTAAGGATATTACTATTCATGCCAACCCATTTGCTGGTTGATTGATTTCATTGTGAAACATTCATAAAGCCTTGTTTTGTAAATAGaaatttttgctgttgttttcagTTTCGCCTTTTcccataatattttacattggGTTTTAAATGCAAggtattttattaacaaataaacattttcactaaattta

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12734 PPIL3; peptidyl-prolyl cis-trans isomerase-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56353 lncRNA downstream 108502 20284623 ~ 20286229 (-) True G38158
TU56349 lncRNA downstream 115630 20276668 ~ 20279101 (-) True G38156
TU56332 lncRNA downstream 233937 20155781 ~ 20160794 (-) True G38147
TU56164 lncRNA downstream 338933 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 438069 19956428 ~ 19956662 (-) True G38019
XR_006251041.1 lncRNA upstream 262360 20659094 ~ 20659471 (-) True LOC122345854
TU56393 lncRNA upstream 263173 20659907 ~ 20660855 (-) True G38171
TU56395 lncRNA upstream 265415 20662149 ~ 20662872 (-) True G38172
TU56396 lncRNA upstream 270790 20667524 ~ 20668474 (-) True G38173
XR_006251043.1 lncRNA upstream 330660 20727394 ~ 20728862 (-) True LOC122345856
XM_043240324.1 mRNA downstream 178 20391686 ~ 20394553 (-) True LOC122345837
XM_043238352.1 mRNA downstream 30605 20348875 ~ 20364126 (-) True LOC122344783
XM_043238350.1 mRNA downstream 46153 20326570 ~ 20348578 (-) True LOC122344781
XM_043240311.1 mRNA downstream 70166 20320918 ~ 20324565 (-) True LOC122345827
XM_043238343.1 mRNA downstream 86899 20304882 ~ 20307832 (-) True LOC122344776
XM_043240312.1 mRNA upstream 154236 20550970 ~ 20564321 (-) True LOC122345828
XM_043240336.1 mRNA upstream 281259 20677993 ~ 20679085 (-) True LOC122345848
XM_043240333.1 mRNA upstream 282806 20679540 ~ 20681669 (-) True edf1
XM_043240323.1 mRNA upstream 287069 20683803 ~ 20686924 (-) True LOC122345836
XM_043240309.1 mRNA upstream 303516 20700250 ~ 20703893 (-) False LOC122345826
TU56325 other downstream 267341 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 338933 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 459155 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 532416 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 967504 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1215954 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1412279 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1481422 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile