RNA id: TU56349


Basic Information

Item Value
RNA id TU56349
length 2396
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G38156
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20276668 ~ 20279101 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAAATTTAATAGTCCTTTGAAGAGACATAATATAATAGGACAATAAACAATACACCCtccatttgttttgtaaaaaagaaCGAGTGAGCCGTCCTCAGCTCTTCAGCTCTCAGGTGAGGGTACCATGAAAACAAATGGCAGAGGAACAGAGAAGCCTTTGCACATAAACCCCTTCCCTCAGTCCAGGTTTGAGGGCACGgcctcattttaaaaaaacgaatattTACACCAACAATGTGTACAATATAGAACAGACAAAATAATGACGTAGAGAAAACAAATTACACTTTGTACAAAAATAgatcattcttttaaaatgcatctctTTCATGTTTTACTGACATGTTCTGTGATGGATTGGTGTCTTACAGGGAAATATAGCGGCACATGAGGATTGTAGCTGATATCAGATCAAGTGTGTCCCGCTCCTGATGGTTTAACAAACCCTGTTTGACACAGTTTGAATCCAAGAGCGTTTacaatgtctgtgtttttcctATACCTCAGCAAAGGGGTTTCTAGTTCTTGTCTGCACATTCTAAATATGCTGGTTTTGGAGTAATGAAAGGCCAAAGATGTCCAATGACAGAACTAACATAAGTCCGCTGATCTTCCATGACACCGATTCAAATTTCAGCCTGGTCGAAGCTTAAAAACACGACCACTAGAACTTAAGGTTGTGTATAACAATCACATGGACAATAGATTCATGTGTATAATCAACTGAATACTCATGTTGTTGTTACCGGCGTTATCATTCAGCAGAACGTGTCATATAAATCAGTAGGTCTTTTGCACTACGTCTGCTAATGACAACTGCTACGCAGCTCAAATAACTCGCGAATTACAAAAACGGTAATTAAAATTCATCGTCATCATGAAAACACTGGTTCAGATTGGCTCAATCTGCAATTGAGGTTTGACGCGTCAATACAAATGTAACGAAATGATCGTTATTACAGTTTCTTCCTTATCACACAGATAAGACTGCAaaacagaaccaaaaaaaactgcatttgaatCAACCTGAGGCTTATTCTGGTAATTGAATTCTGTAAAAACCCAACTGTTAAACTTCATGTAATAGCAAATGAGTAGAGCTGCAATGTCACAACTTTTCCAATAGGGGACAGGCATGGCACTTCCCAAACCTCGCAATTCCCTGAGGCCAGACTATCATCTGGATTCCTTTAACTCCTTGCATATTTTCAAATCACAAACACCCACTTGCTGGGAATtatcagattatatatatatataaacattgaaAATCTTTGGAAATACGTATTTATGCTGAATTATAGAggcaaaacaatgaaaaatcatagtttttttttttacacaattctAACAATgaatcattgtatttttttaaatctagaaaGAGTTCAGCCAGGAGTACACCtgcttttcattctttttagaCCATTCTGTTATTCGCAGGTCCATACATCTTCCAAAAAGAAAGGGACTTGAAGCCAGTTTGCAGTTTGTTCCTCATGAGGATGGCCTTGAAGAATCCTGACGTATGACAATACCGCTTAAAGAAGCAGTTTCTAAGTgcgtggtggtggtggtggtggtggggaaGTGGTCCTGTTCACTGTTCCAATGGCAGATAcagtaatatgttttttaaggACAGCTGCATGAAGAAGTGCATCCGAGGTATTTTGTTTCCTCTCATGAAATCTGAAAATTCACAGCAAAATGATTGTGAGTTCAGAGATGAGGCGGTTTGGCTGCGTACAAAAGCAGAGGTAGACCTCTGTAAGGCAGAAGAAATGAGAAACCTAACACTCCAGAACTGTGTGAGACTTCCCAAATGTGCATGCAAACCAGGAAAAAACTCACTCAATCCATCCTGCGTGCCGTTCCGTAATGAACGGTTACACGCTATTTTGTGGATTGCGCAATGTCTCTGATAAAAGGCCAAGGCAGAATTACTCTGAGTTCAGTCCTCTCCTGTGAGATCAGAGATGTGTCCTGTGGCCTCTGTAGTGTTCTGTACACGAGGGGCGGAGATGAAAAGAAACTTATGTCATTTGGTGTGGAGCTTCGAGCATTTCCATTAGGAAAGTGTCGATGGGCGTGTCTCCGATTAATTTGAAAAAGAAGAGATGTTCGAGACACTTGAGGCCGATGGAGCGCAGGGCAGGCAGACGCAGCAGCAGCTTGGCAAATCTGTCCGTGAAACAATGAACGTCAGTGTTTGGATGAGCACAGTGTAATACttaagcagtttttttaataaattaccgttcaaaagtttgaggtcagtgcgtttttttttttttttttttacatagcattgatgaaaagtgacagtacggacatttataatgttacaaaggatttctgtttcaaatgaatactgttcttttgaactttacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56332 lncRNA downstream 115874 20155781 ~ 20160794 (-) True G38147
TU56164 lncRNA downstream 220870 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 320006 19956428 ~ 19956662 (-) True G38019
TU55943 lncRNA downstream 572983 19703420 ~ 19703685 (-) True G37928
TU55941 lncRNA downstream 574325 19702069 ~ 19702343 (-) True G37926
TU56353 lncRNA upstream 5522 20284623 ~ 20286229 (-) True G38158
TU56356 lncRNA upstream 18207 20297308 ~ 20677930 (-) True G38161
TU56326 lncRNA upstream 116536 20395637 ~ 20396293 (-) False LOC122345844
XR_006251041.1 lncRNA upstream 379993 20659094 ~ 20659471 (-) True LOC122345854
TU56393 lncRNA upstream 380806 20659907 ~ 20660855 (-) True G38171
XM_043240337.1 mRNA downstream 91645 20172243 ~ 20185023 (-) True olfm1a
XM_043239941.1 mRNA downstream 138232 20132184 ~ 20138436 (-) True lrrc8ab
XM_043239940.1 mRNA downstream 144721 20130459 ~ 20131947 (-) True ppil3
XM_043239939.1 mRNA downstream 146447 20127887 ~ 20130221 (-) True zgc:101858
XM_043240344.1 mRNA downstream 167430 20095469 ~ 20109238 (-) True ptgs1
XM_043240318.1 mRNA upstream 413 20279514 ~ 20285219 (-) True LOC122345833
XM_043240335.1 mRNA upstream 20045 20299146 ~ 20300348 (-) True LOC122345847
XM_043240338.1 mRNA upstream 21393 20300494 ~ 20302616 (-) True LOC122345852
XM_043238343.1 mRNA upstream 25781 20304882 ~ 20307832 (-) True LOC122344776
XM_043240311.1 mRNA upstream 41817 20320918 ~ 20324565 (-) True LOC122345827
TU56325 other downstream 149278 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 220870 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 341092 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 650049 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 1085137 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1333587 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1529912 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1599055 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile