RNA id: TU56356


Basic Information

Item Value
RNA id TU56356
length 1588
lncRNA type read_through
GC content 0.34
exon number 2
gene id G38161
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20297308 ~ 20677930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttatttacgAAAAACGAGGGGCTCAGTGTCCAAATCTCAAGATTAGCTTATACATCAGATATTACCATGTAAGTCTGTGCCAAAACATACTTGTCAACTTGCTTTAACTTGCTGAACTTAACATATGCAGCGCTaccaattttaaaattttactcGAAAGAATGACATTTACATGTTATAAACTGCTCAAAAAGTTTaagaaatatactgtaaattgGCATGCAATACAcaaatgttctctctctctctctctctctctctctcataaaaaagaactaaaatacTTAGACCCGAGACAGAGTTGACGAATAAGTagtgaatatacatttatatctgTAATTATATATCCTATGTATCTTTATATCTCTGTCTGCATCACGAAGCTCAGTTTTATTTACTGGGCTCTGCTGGAGGAATTGAGGAAGAGGAACTGTAACAGAAATCATCTTTGAGACAAGGTAGGTTATAGTCACAAGGAACATGTAATGCAATACAGTGGTATAATGAAGAAAATCAAACCATAATTAAAAGCATCCTACATAAAGAAAACCAATGAAGTCACTTTACATCACGATTTCTTGATGCGttttcatgatttaaaaaaacaaaacaaaacaactataCACATTGGCTTCAACTTAATCAGTTATACCGGACCAAtctgactttattttaatgtgccaACTAAACTTAAGGCAACAAGAGCACATCCAATGATTTCTGAGGGGGTTCAGGCTTGAATTCAAGGCTGTTAAAGAAATCCTCGCCAATGCAACAAACCCAGTATGAGTGGCATTACTGCAGccacaagaagaagaagaaaaaaaaaaaaactaatacattcatattttttttttataaagattaTCAGTCATGGTCCATTTCCAAACTATTCTGGATACATGGCAAGAAGTGTCTAGGTACCATTGAAAGCATTCGATACACCATTCGgagaaaaaactaaagtaaaataaagttattaaaattgaGAACGTACATTAGTTGTAATACtttcaactaaaaataactattgTCAAACACGTATCCTTCTGAAATGACATCTAGCACAGCTGCTTGAAATCTTGTCTTTTCTTTACGGAGATCTCCTATTAAGTGGCTATTATTCTAGTATTCACTTAGTTTGGAGTTTCGTGGAGGCCGATTCGTTCCAATCTGCAGCCTTACGGGCGTTTTTTTGAAATTCTCAATGTATTTTTGCCATCATTCATGATAAATACACCCCGTTTCATATATACTGAACTTAAATCACAACTTTGATTGTCCTATGAGTGGACTTAGTAAAGATGAGGCATATCAGATAGAAAGTAGGAAATTAGATACTCAGGAGCCTACAAatgaatagtaaaaaaaaaaaaaaagtaggaagAAGACAAtccaaatagaaaacaaatgagCATATGATATAGattaaaaacgaacaaacaaaacaaaaaaaaaaattcagacatAATTCTACATCAAATACTGAGCTGACAGCACCGGAAGAGAAAGTTTACAGTGTTGCAATGATTACGAAGCCTCTGAAAACGGTTTAATAATGATACTGACAGTTTCCAGATGCGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56353 lncRNA downstream 11079 20284623 ~ 20286229 (-) True G38158
TU56349 lncRNA downstream 18207 20276668 ~ 20279101 (-) True G38156
TU56332 lncRNA downstream 136514 20155781 ~ 20160794 (-) True G38147
TU56164 lncRNA downstream 241510 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 340646 19956428 ~ 19956662 (-) True G38019
XR_006251043.1 lncRNA upstream 49464 20727394 ~ 20728862 (-) True LOC122345856
XR_006251045.1 lncRNA upstream 99773 20777703 ~ 20778572 (-) True LOC122345858
TU56449 lncRNA upstream 192215 20870145 ~ 20870357 (-) True G38217
TU56450 lncRNA upstream 207355 20885285 ~ 20886986 (-) True G38218
TU56454 lncRNA upstream 296035 20973965 ~ 20976673 (-) True G38221
XM_043240318.1 mRNA downstream 12089 20279514 ~ 20285219 (-) True LOC122345833
XM_043240337.1 mRNA downstream 112285 20172243 ~ 20185023 (-) True olfm1a
XM_043239941.1 mRNA downstream 158872 20132184 ~ 20138436 (-) True lrrc8ab
XM_043239940.1 mRNA downstream 165361 20130459 ~ 20131947 (-) True ppil3
XM_043239939.1 mRNA downstream 167087 20127887 ~ 20130221 (-) True zgc:101858
XM_043240336.1 mRNA upstream 63 20677993 ~ 20679085 (-) True LOC122345848
XM_043240333.1 mRNA upstream 1610 20679540 ~ 20681669 (-) True edf1
XM_043240323.1 mRNA upstream 5873 20683803 ~ 20686924 (-) True LOC122345836
XM_043240309.1 mRNA upstream 22320 20700250 ~ 20703893 (-) False LOC122345826
XM_043240308.1 mRNA upstream 22320 20700250 ~ 20703893 (-) True LOC122345826
TU56325 other downstream 169918 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 241510 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 361732 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 251220 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 686308 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 934758 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1131083 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1200226 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile