RNA id: TU56450


Basic Information

Item Value
RNA id TU56450
length 1702
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G38218
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20885285 ~ 20886986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGGTGGAAGTCAATACGGCAAAGGAACGCTTTGTACGATTTTCCAGAGGTGACATTTCTATAACATTTTCCTTGTGCATCagagactttttatttattactcatACAAATTGAGTGGCTGGGAAAACAGGTCATTTCTTACGCCAGACCTTTGCTTTCTAACCGGAACAGAGAAACCGACAGAGAAATAAACAGTACggggaaaaaaagacttttgatCACACCAAGTAACACTGGagacatataaaaataacttagatgaactgtgtaaatataaataaaaagacaacatttttaataaataattctattatttacaacattgtATATTGCTAAGAgatttaaattactaaaatactgAACAAGTAAGCAGCAAACATTACAGGCATGAGGTACAGCAAAAAAGATCCTGTTAAGTTTACAGTAGACTGTTTCACCAAACTTCATTTGATTTGATCTTGTTTTTCATGgcttcagaagaaaaaaaaaagttacattgcGTTAGATTGcgttcagctttttttttttttttttttttttttttttacatttccaggaaatcaaaaaagacagaaacgGTTGATCGCTGTTTGTGTACAACACCCAAGTAAAGAACTGTATGTACTGTAAAGCTCAGTAAAGGTCCATTTTCAGTGATGTCTGAAACCGGTTGGTAAGATTGCACATATATTGGTATCTGTTCTAGGCACTCTTTCCAAGTGATAATTGAATAAAAGCAGcagtattttagcatttactatGCAATAATAGCATACAGTTTAATACTAGGAACAAAGACGTCTATAGAGACTAAATATGACATGATCTTTACATCGAAAGGAATGACGACAGAGCTGCTTGTGTACACGAATAAATAAGTCATCAGTGACTGTGACGACCTACTCTGTCATCTCACTGTTgccatgtctcttttttttcctttggataTCCTTTGACGGTAGCTGTGTTTTTAACATATGTATCTGTAATCGAACTACACACATATCTCTTCAATACTAGCCGTTTTAACCAAAGGTagtgaaaaaagaagaaatcaacaacaacacacagtaTAAAGTACTATTCAATGATGTCATACACTAAACGACTATTTCATTTAACTATTATGATAACCTGTCTGACCatagcagctttttttttttttttttttttatggtaaacttttttcttttccatcttttttttctatatcaTTGACAAAACAACCGTACAAAGACAAGTGCAGCAACTGTGgtcaaagataaaaaatattgattgaCAGAGATACAGTTGAACGAAACCACCAGATATAAATTACCTTATAATCTTCACTTCGGAAAAACGACATCGGTAGACATTGACGCCATAGAAATAACCTCTTATCATGGGCTGGGCTGACGCGACCTGTTGGGATATCCTGGTTTGATAAGTAGCCTCACTTCTGCTGTCACAACAGTTGATGTTTTTTATGCTACATTGTTAATGTAATGAGAAAGATGCcttttagatgtatttataaGAGCTCAGGGAGATCGCGAGGGTGGCTGATAAATGCTCCTACTGTAGGTCATTTTGTTGTCTCTATACTTTCTAAAAGTGGTTTGTAAACCAACGTgtagatattaaaatatcatgtgTTTAATGGGGTCGTCCTGACTGCCATTGACTACCACACACGCCACCACAGACTACAATCTCCAG

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56449 lncRNA downstream 14928 20870145 ~ 20870357 (-) True G38217
XR_006251045.1 lncRNA downstream 106713 20777703 ~ 20778572 (-) True LOC122345858
XR_006251043.1 lncRNA downstream 156423 20727394 ~ 20728862 (-) True LOC122345856
TU56396 lncRNA downstream 216811 20667524 ~ 20668474 (-) True G38173
TU56395 lncRNA downstream 222413 20662149 ~ 20662872 (-) True G38172
TU56454 lncRNA upstream 86979 20973965 ~ 20976673 (-) True G38221
TU56453 lncRNA upstream 92123 20979109 ~ 21011904 (-) True G38220
TU56532 lncRNA upstream 147897 21034883 ~ 21037628 (-) True G38248
TU56535 lncRNA upstream 153144 21040130 ~ 21040881 (-) True G38251
TU56536 lncRNA upstream 156380 21043366 ~ 21044059 (-) True G38252
XM_043238394.1 mRNA downstream 159266 20722066 ~ 20726019 (-) True LOC122344820
XM_043240321.1 mRNA downstream 163179 20718617 ~ 20722106 (-) False LOC122345835
XM_043240320.1 mRNA downstream 163179 20718617 ~ 20722106 (-) True LOC122345835
XM_043240307.1 mRNA downstream 167458 20706459 ~ 20717827 (-) True qsox2
XM_043240310.1 mRNA downstream 181394 20700250 ~ 20703891 (-) False LOC122345826
XM_043240142.1 mRNA upstream 19057 20906043 ~ 20936097 (-) False LOC122345723
XM_043240141.1 mRNA upstream 19057 20906043 ~ 20936097 (-) True LOC122345723
XM_043240143.1 mRNA upstream 19057 20906043 ~ 20931399 (-) False LOC122345723
XM_043240171.1 mRNA upstream 51905 20938891 ~ 20966924 (-) False dnm1b
XM_043240172.1 mRNA upstream 51905 20938891 ~ 20966924 (-) True dnm1b
TU56325 other downstream 757895 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 829487 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 949709 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 42164 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 477252 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 725702 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 922027 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 991170 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile