RNA id: TU56535


Basic Information

Item Value
RNA id TU56535
length 447
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G38251
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21040130 ~ 21040881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCACTTTCAGTTTCTTGACCACGCTCTCAGTgccaaatgcagtttttaaagtgAAAGTGAGCGTATGAGTGCCTGCTTCCAAGGCCATGATATAGAATGAGACCAAGGCCACCGAACGACCTTCTATGTTTTCATGTGGCTTTTCATGTTTCCCAGGTTGAGATccacgaaacacacacactccctctgtTGCTGTCAGGGTCACACTAAACTGTTTATCTTTTACCCGAGTGCTTGAATGGCGCTGATTATATACTGAACCCCGAAGCTCAATTTGTTCTCCACGAACCATGGAGTAAGGCAAGGGCACATCCACACTAATGTCCTGGGACACCTGAATCTTTTCTTCTGACAAACAGATCCCTGACCAAAGAAAGAGTGTGAGAGTTTCAccaaaaactgcttttaaacaaaGGTCTGCATGCACAATACATTATTAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56532 lncRNA downstream 2502 21034883 ~ 21037628 (-) True G38248
TU56453 lncRNA downstream 28226 20979109 ~ 21011904 (-) True G38220
TU56454 lncRNA downstream 63457 20973965 ~ 20976673 (-) True G38221
TU56450 lncRNA downstream 153144 20885285 ~ 20886986 (-) True G38218
TU56449 lncRNA downstream 169773 20870145 ~ 20870357 (-) True G38217
TU56536 lncRNA upstream 2485 21043366 ~ 21044059 (-) True G38252
TU56538 lncRNA upstream 3284 21044165 ~ 21046644 (-) True G38254
TU56693 lncRNA upstream 80235 21121116 ~ 21121412 (-) True G38329
TU56694 lncRNA upstream 81912 21122793 ~ 21123642 (-) True G38330
TU56700 lncRNA upstream 109057 21149938 ~ 21151843 (-) True G38334
XM_043240171.1 mRNA downstream 73206 20938891 ~ 20966924 (-) False dnm1b
XM_043240172.1 mRNA downstream 73206 20938891 ~ 20966924 (-) True dnm1b
XM_043240142.1 mRNA downstream 104033 20906043 ~ 20936097 (-) False LOC122345723
XM_043239217.1 mRNA upstream 28491 21069372 ~ 21074843 (-) True rab14
XM_043239215.1 mRNA upstream 40059 21080940 ~ 21084821 (-) False ttf1.6
XM_043239214.1 mRNA upstream 40059 21080940 ~ 21084765 (-) True ttf1.6
XM_043239133.1 mRNA upstream 136501 21177382 ~ 21179981 (-) True LOC122345218
XM_043239134.1 mRNA upstream 222767 21263648 ~ 21293809 (-) True zswim7
TU56460 other downstream 104037 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 912740 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 984332 20051659 ~ 20055798 (-) True G38058
XR_006251077.1 other downstream 1104554 19867386 ~ 19935576 (-) False kcnt1b
TU56747 other upstream 323357 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 571807 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 768132 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 837275 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 837275 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile