RNA id: TU56694



Basic Information


Item Value
RNA id TU56694
length 850
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G38330
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21122793 ~ 21123642 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aaactgCAACGTTATGTGTTTGATTTGAGATGAAGAGACACTCTGCAATGAAATGCAATGTGAAATGCAAAACAGCTCTACACTTTTTACTGAAAGAGTTAATGTAAGTACTTTTATAAAAAGATTGCAGCAttgaaaacatccaaaaattGACCTTTTTTTAGGGGACACAGATTTTAAATCGTAATTTTGACCATACAATCTCATggccacagaaaaaaacatttagctcATCCTGACAAAGAATACACTGGAACTTATGTCATAACAAAAAGATTCTCAAAatccaaaagaaaaagaactcACCTCTGAGCTCCAGTAGAAAGGCCCTGAGTAATCTGTTCGTCCCCTGATCGTGCTTTCTTTGACTGTGTACACTGCTGCTTGGTCACAGATCTCCAGTGTGGCCAGCTCCCGCATCAGGTCTGACTGACTGACCGACCTGCGCTGCCTTGACAAGGGCGATGTGCAGCTATATCCGGTCCTTGACGGTGAGCGCCCCCTCGGCCCGTTAATTCGGGGAATCTGACCTTTAACCTGCATCCTGCTGTAGCTCTCACTCCGGCGGCCGATGTGGGGCTCCGAATGGGGTGCAGCTCGCCCACGTTCGGGCTCCTGGGGAAAGAACAGGACGCCTCGAGCGAGGCAAGGGCTGGGGTTCAGGTAGCGGGAGGTGGAAGGAGCATACCTGGAAAGCTGAGGCTGACCTCGGACGATATATCCCAGGGTGGGATCGCAGGGGTCATAGGAACTGTACGGACTTAAGAGGGTGGAGCCAGTGATGTATTTGGGGGGTGAGTAGACTGGAGACATGATCGAGATGTGAAGAGAAATCAGCCCCAAGGTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56693 lncRNA downstream 1381 21121116 ~ 21121412 (-) True G38329
TU56538 lncRNA downstream 76149 21044165 ~ 21046644 (-) True G38254
TU56536 lncRNA downstream 78734 21043366 ~ 21044059 (-) True G38252
TU56535 lncRNA downstream 81912 21040130 ~ 21040881 (-) True G38251
TU56532 lncRNA downstream 85165 21034883 ~ 21037628 (-) True G38248
TU56700 lncRNA upstream 26296 21149938 ~ 21151843 (-) True G38334
TU56699 lncRNA upstream 26566 21150208 ~ 21151843 (-) False G38334
TU56717 lncRNA upstream 49036 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA upstream 49036 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA upstream 237369 21361011 ~ 21362123 (-) True LOC122345899
XM_043239215.1 mRNA downstream 37972 21080940 ~ 21084821 (-) False ttf1.6
XM_043239214.1 mRNA downstream 38028 21080940 ~ 21084765 (-) True ttf1.6
XM_043239217.1 mRNA downstream 47950 21069372 ~ 21074843 (-) True rab14
XM_043240171.1 mRNA downstream 155869 20938891 ~ 20966924 (-) False dnm1b
XM_043240172.1 mRNA downstream 155869 20938891 ~ 20966924 (-) True dnm1b
XM_043239133.1 mRNA upstream 53740 21177382 ~ 21179981 (-) True LOC122345218
XM_043239134.1 mRNA upstream 140006 21263648 ~ 21293809 (-) True zswim7
XM_043239135.1 mRNA upstream 151048 21274690 ~ 21293809 (-) False zswim7
XM_043239238.1 mRNA upstream 170479 21294121 ~ 21295572 (-) True nanos2
XM_043239237.1 mRNA upstream 172617 21296259 ~ 21311401 (-) True LOC122345264
TU56460 other downstream 186700 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 995403 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1066995 20051659 ~ 20055798 (-) True G38058
XR_006251077.1 other downstream 1187217 19867386 ~ 19935576 (-) False kcnt1b
TU56747 other upstream 240596 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 489046 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 685371 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 754514 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 754514 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile