RNA id: TU56699


Basic Information

Item Value
RNA id TU56699
length 1586
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G38334
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21149938 ~ 21151843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGTAGACATTtgcttttattcatatttacttCTTTTAAAAAGCCAAGAGCTCTTGATATGCGGTACACTATAGTCACATTTCAGACACAAAATAATTACCACTCACTTAAAATCTCTCTGTAGAAAAAAACGTTGCCTGGTTCAAGCACAACAATAAGCTACATTCACAACATTCACATCATAAATAGTGAAATAATACATAAAggcgctctcacacacacacacacacacacacacacacacacaaccctcCTGGTggctttttatttgataaagacTCATCcccaaattaaactaaatattgtaGTCCCTGACAGAATGAGAACATAAGGCCTCTTTCAAATATATTGCCCCTGgagtaaaagtattaattccACAAACATGTAAAAAAGGAATACTATATATTCTCCTGGAGATGGACCCTTTTCACATGTCAGAAGAACCTTTGTTTGGTATAAAACGCAACAAGtatacatattgttttattttcccaCCAGCAAAGAAATAATCCAAGATAGCATTGCTATGACCGAAAACAGGAAGAACATTTTGGGAGATTGATTATGTTGGTCAGAAAAGATAAAGATACTTGCTTTCACTCGCTCGGCCATTATATTACAATCATTCTCTCTGAAAGATTCATGATGTGAAAAAATGATGGAAACATATTCTGTTCTGTGAAAAAGGTCCATAGTGTTTTCTTTCAGGTTTTACAACTTCCAGCCACCAGGGGGCAGTCATACAATCTTCTCTGTAATGGTGAGGGTTTTTGGAAGGGCCACAGTCATGCATTAGCATAGAACTAAGCCCTTCCCATGTGCATATTCTGTTGAAAATCAAGCAAAGCGGAGACTTATCTCGAAGGAACAGATCTGTTCGAAATAGTAAACAATCCATTGAGCAATCCAAGCATCATTTACACAGTTGACCTACATGGTCCCTCAGCGACATgacctctgttttttttaaattagtagcAATTAGCTTGAAATTAAGTAAAACATTAAACTcctgttaataaattaaataagggATGGGGATTGTTTGAGTCGTGGTTACTGTCTGTAGAGCCGGACGGCTCCAGTTACACAGTGCATAGAGTCCTACAGTATCAGTCTGGAGACTGACtcgtacacacacaaatacacacacacagtcctgcTCATTCAAGAGAGGTAGTAGTTCATGTTCCTCTGTCTTTGTCCGTTTCACTTTGTTAAATCCATCCCCGGTGCAGCAGCAGCCTCTTTCAAAGGGGAGTGATGGATGGAGGAGCCCTTACTGTGAAGCTCGGTCTGGGCTAGGATTAAACTTTTATCCCAGGCTTCATTCCACTTCATAGGCCACGACCATAATTCAGTTCCGGTACGTGTTTGGCCTTGGTTAAAAGGCCTGGGATAAAGTCCCATGGTCCTGCGAGCATGTAGGCCGAGGCCATGATACAGTTTAACAGCAGCAAAAGGGATATTTCATCCAAGGCTTGTCCGCTTCAGGTGTAATCACATGCGTGAAGAGGTCGCAGATTCGTAGAACAGCACATATGCATCGCTGCTGCGCACCTGGCTGGATGACATGGGGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56694 lncRNA downstream 26566 21122793 ~ 21123642 (-) True G38330
TU56693 lncRNA downstream 28796 21121116 ~ 21121412 (-) True G38329
TU56538 lncRNA downstream 103564 21044165 ~ 21046644 (-) True G38254
TU56536 lncRNA downstream 106149 21043366 ~ 21044059 (-) True G38252
TU56535 lncRNA downstream 109327 21040130 ~ 21040881 (-) True G38251
TU56717 lncRNA upstream 20835 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA upstream 20835 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA upstream 209168 21361011 ~ 21362123 (-) True LOC122345899
TU56726 lncRNA upstream 259142 21410985 ~ 21414269 (-) True G38347
TU56961 lncRNA upstream 544485 21696328 ~ 21697193 (-) True G38507
XM_043239215.1 mRNA downstream 65387 21080940 ~ 21084821 (-) False ttf1.6
XM_043239214.1 mRNA downstream 65443 21080940 ~ 21084765 (-) True ttf1.6
XM_043239217.1 mRNA downstream 75365 21069372 ~ 21074843 (-) True rab14
XM_043240171.1 mRNA downstream 183284 20938891 ~ 20966924 (-) False dnm1b
XM_043240172.1 mRNA downstream 183284 20938891 ~ 20966924 (-) True dnm1b
XM_043239133.1 mRNA upstream 25539 21177382 ~ 21179981 (-) True LOC122345218
XM_043239134.1 mRNA upstream 111805 21263648 ~ 21293809 (-) True zswim7
XM_043239135.1 mRNA upstream 122847 21274690 ~ 21293809 (-) False zswim7
XM_043239238.1 mRNA upstream 142278 21294121 ~ 21295572 (-) True nanos2
XM_043239237.1 mRNA upstream 144416 21296259 ~ 21311401 (-) True LOC122345264
TU56460 other downstream 214115 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1022818 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1094410 20051659 ~ 20055798 (-) True G38058
XR_006251077.1 other downstream 1214632 19867386 ~ 19935576 (-) False kcnt1b
TU56747 other upstream 212395 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 460845 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 657170 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 726313 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 726313 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile